Camelina sativa (false flax): 104735899
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Entry
104735899 CDS
T05044
Name
(RefSeq) protein PIR-like
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104735899
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104735899
Factors involved in mRNA localization
Other mRNA localization factors
104735899
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
WASH-4_N
Motif
Other DBs
NCBI-GeneID:
104735899
NCBI-ProteinID:
XP_010454079
UniProt:
A0ABM0VCB5
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Position
13:complement(7984665..7993071)
Genome browser
AA seq
1282 aa
AA seq
DB search
MAVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPIEYSDVAAYRLSLSEDTKA
LNQLNTLIQEGKEMASILYTYRSCVKALPQLPESMKHSQADLYLETYQVLDLEMSRLREI
QRWQSSASAKLAADMQRFSRPERRINGPTVTHLWSMLKLLDVLVQLDHLKNAKASIPNDF
SWYKRTFTQVSAQWQDTDTMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIV
FIVESLELDFALLFPERYILLRVLPVLVVLATPSEKDTEALYKRVTLNRLINIFKNDPVI
AAFPDLHLSPAAILKELSVYFQKFSSQTRLLTLPAPHELPPREALEYQRHYLIVNHIGAL
RAEHDDFTIRFASSMNQLLLLKSNDGAYTEWCREVKGNMYDMVVEGFQLLSRWTARIWEQ
CAWKFSRPCRDAGETPEASGSYSDYEKVVRYNYTTEERKALVELVGYIKSVGSMLQRCDT
LVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTRPEHEI
PSSQHGSDESRSNFFYPRPVAPTAAQVHCLQFLIYEVVSGGNLRRPGGFFGNNGSEIPVN
DLKQLETFFYKLSFFLHILDYSASIGILTDLGFLWFREFYLESSRVIQFPIECSLPWMLI
DYILEAQNSGLLESVLLPFDIYNDSAQQALVVLRQRFLYDEIEAEVDHGFDIFVSRLSES
IFTYYKSWSASELLDPSFLFALDNGEKFSIQPVRFTALFKMTKVKILGRTINLRSLIAQR
MNKIFRENLEFLFDRFESQDLCAVVELEKLIDILKHSHELLSQDLSIDPFSLMLNEMQEN
ISLVSFSSRLATQIWSEMQSDFLPNFILCNTTQRFVRSSKVPPTQKPSVPSAKPSFYCGT
QDLNAAHQSFARLHSGFFGIPHLFSIVKLLGSRSLPWLIRALLDHISNKITTLEPMISGL
QEAMPRSIGLLSFDGGVTGCMKLIREQLNWGSKSELKSEVLRGIKEIGSVIYTMGLLDIV
LREIDTKRFMQTAPWLGLIPGAEGQIVNAQDGESPLVNLLKSATSAVVSSPGCLNPAAFY
TMSKQAEAADLLYKANMNGGSVLEYTLAFTSASLDKYCSKWSAPPKTGFIDITTSKDFYR
IYGGLQIGYLEEVTAPQSAQYEVLGDSIAWGGCTIIYLLGQQLHFELFDFSYQVLNVSEV
ETVSASHTHRNPQIHQGWEGLLEGMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPL
PRVRFENTVSAFETLPQKGTVG
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcctgtagaggaagcaatcgcagctctttccacattctccttagaggatgag
caaccagaagtccaaggacctgctgtgatggtttcagctgaaagagcagctactgatagt
cccattgagtatagtgatgttgcagcataccggttgtctctctcagaagacacaaaagct
cttaaccagctgaatacacttattcaagaaggaaaagagatggcgtcaattctatacaca
tatagaagttgtgttaaagcactacctcagcttcccgaatctatgaagcatagtcaagcg
gatttgtatctagaaacatatcaggttttggacttagaaatgagtcgtttacgcgaaatt
cagagatggcaatcgtcggcttcagctaaattagctgctgacatgcagcggttttccaga
cctgaacgacgcatcaatggccccacagtcactcatctttggtcgatgctaaagttgctt
gacgtcttggttcagctggatcatcttaaaaatgctaaagctagcattcctaatgatttc
tcttggtacaagagaacattcactcaagtcagtgcgcagtggcaagatacagatacaatg
agagaagagttagatgacttacagattttcctgagtacacgatgggctattttactgaac
ctgcatgttgagatgttccgtgtaaacaatgtggaagatattctccaagttctcatagtc
ttcatcgtggagtctctggagttggattttgcactactttttcctgagcgttatattctt
cttcgagttttaccggttcttgttgtcctagcaacaccatctgagaaagataccgaggct
ttgtacaagagggtaacactgaacagattgatcaacattttcaagaatgatcctgtcatt
gctgcgtttccagatctccatctttctcctgctgcaattttaaaagaattgtcggtatac
tttcaaaagttttcatcacagactcgccttctgactcttccagcacctcatgagctccct
ccacgtgaagcgctagaatatcagagacactatctgatagtcaatcacattggagctctt
cgcgctgagcacgatgatttcacaatccgatttgcatcatccatgaatcagttattgctg
ttgaagtcaaacgatggagcatatactgaatggtgcagagaggtcaaaggaaatatgtac
gatatggttgttgaaggcttccaactgttaagtagatggacagcgcgcatttgggagcaa
tgtgcttggaaattctctcgcccatgtagggatgcaggagagactccggaagcctccgga
tcatactctgattacgagaaggtggtgaggtataattatactacagaagaaaggaaagcc
ttggtcgaacttgttggctatataaagagtgtaggatcgatgctgcagcgctgtgacaca
ttagttgcagatgctttatgggagacaatacatgccgaagttcaggattttgtacagaac
acattagctacaatgttgcgtaccaccttccgaaagaagaaagatctctcaaggattctt
tctgatatgcggacactctcagctgattggatggcaaataccaggcccgaacatgagatt
ccatcttcacaacatggaagtgatgaaagcagatcgaatttcttttatccaaggccagtt
gccccaacagcagcacaggtgcattgcttgcagtttctgatttatgaggttgtctctggt
ggaaatctgaggaggccagggggattctttggaaataatggctctgagattcctgttaat
gacttgaagcaattagaaactttcttttacaagctcagctttttcttgcacatattagat
tactcggcaagtattgggattctgactgatctggggttcctgtggtttagggaattttac
ctggagtcttcacgtgttattcagttcccgattgagtgttcactaccatggatgttgata
gactacattctggaagcccagaattcaggccttcttgagagtgttctgctgccttttgac
atttataatgactcagctcaacaagctctggttgttctgaggcagagatttctctatgat
gaaattgaagctgaggtggaccatggttttgatatatttgtttcaaggctttcggagtct
atattcacatattacaagagttggtcagcgagtgagcttcttgatccatcatttctcttt
gcgttggacaatggtgaaaagttctccatccagcctgtgaggtttactgcgttatttaaa
atgacaaaagtaaagatacttggtagaacaattaatttaagaagtttgatcgctcaaagg
atgaataaaatctttagagagaacctggagtttctttttgaccgttttgagtctcaggat
ctatgtgctgtagtggaattggagaagctgatagatatcctaaagcactcgcatgaattg
ctttcacaagatctttccatagatcctttcagcctcatgttgaatgaaatgcaagaaaac
atttctcttgtctcattttcaagtcgacttgctacacagatctggtcagagatgcagagt
gatttcctaccaaacttcattctttgcaataccacacagcgatttgtccgttcatcgaaa
gttcctcctactcagaaaccatcagtgccttcggctaagcctagtttctattgtggtact
caagacttaaatgcagctcatcaaagttttgcacgattgcatagtggattttttgggata
ccacatttattttccatagttaaacttcttggatccagatcattgccttggctaataaga
gctttgctggaccatatatcaaataagataactacacttgagccaatgatctctggattg
caagaagcaatgcccaggtctattggattgctttcttttgatggtggtgttacaggttgt
atgaagcttatacgagagcaactaaactggggcagtaagtcagaactcaagtcagaagtt
ctacgaggaataaaggaaattggaagtgttatatatacaatgggacttctcgatatcgta
ttgagagagatagacacaaagcgtttcatgcaaacagctccatggttgggattaatcccg
ggtgctgaaggacagatagttaatgctcaagacggtgaaagccctcttgtcaatctctta
aagtcagcaacttctgcagttgtgtcaagtcccggttgtcttaatccagcagcgttctac
actatgtccaaacaggcagaagctgcagatcttttgtataaggcgaacatgaacggtgga
agcgttcttgaatacacacttgcattcacaagtgcgtcactcgacaaatattgtagtaaa
tggagtgctcctccaaagacaggcttcattgatatcacaacttcaaaggatttttaccgt
atatacggtggtctgcagattggatatctggaggaggtaacagctccacagtcagctcaa
tatgaagtgcttggtgactcgatagcttggggtggttgcaccattatatacttgctcggc
cagcaacttcactttgagttgtttgatttctcgtaccaagtactcaatgtctctgaggtt
gaaactgtctctgcttcacatactcataggaatcctcagatccatcagggatgggaaggt
ttgttggaagggatgaagaaagctcggaggctgaataatcacgtcttctctatgcttaaa
gctcgttgtcccctagaagacaaaacggcttgtgctatcaaacagagcggcgcgccgctc
ccacgtgtcaggtttgagaatactgtatctgctttcgagactctacctcagaaaggtacc
gttggctga
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