Camelina sativa (false flax): 104736399
Help
Entry
104736399 CDS
T05044
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104736399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104736399
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104736399
U7-dependent histone pre-mRNA processing factors
104736399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
Beta-Casp
CPSF100_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
MBL_MAP1B
Motif
Other DBs
NCBI-GeneID:
104736399
NCBI-ProteinID:
XP_010454671
UniProt:
A0ABM0VDT8
LinkDB
All DBs
Position
13:10910606..10916621
Genome browser
AA seq
739 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSVDGFNFLIDCGWNDLFDTSLLEALSRVASTIDAVLL
SHPDTLHLGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID
NAFQNVIRLTYSQNYHLPGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE
RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA
GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF
LLRHVTLLINKTDLDNAPPGPKVVLASMGSLEAGFARDIFVEWANDPRNLVLFTETGQFG
TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH
GSDDNSSEPMVIDTKTTRDVVGSHGPAYKDILIDGFVPPSSSVAPMFPFFDNACEWDEFG
EVINPDDYVIKDEDMDRGAMHTGGDVDGRLDEATASLMLDTRPSKVISNELIVTVSCSLV
KMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIEETVD
VTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTESDMRSLQPMAGAASPHKPV
LVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQILIEGP
LCEDYYKIRDYLYSQFYLL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgggtacttcagtgcaggtaacgcccttgtgcggagtttacaacgagaatcctctctcc
tacttagtctccgttgatggtttcaatttcctcatcgactgtggttggaacgatctcttt
gacacatcgctcctcgaagctctctccagggttgcttctactatagatgcagttttgctt
tctcatccagatacgcttcaccttggtgctcttccttatgctatgaagcagcttggactc
tctgctcccgtttatgctactgagcctgttcatagattaggtcttctcacaatgtatgat
cagtttctatccaggaagcaagtttccgactttgatctgtttacactggatgacattgat
aatgctttccagaatgtgatcagattgacctactcacagaattaccaccttcctgggaag
ggagagggtattgttattgctcctcatgttgctggacacatgttgggaggtagcatctgg
aggataacaaaggacggggaggatgttatatatgctgttgactacaatcatcggaaagaa
aggcatttaaatggaactgttctacagtcttttgttcggcctgctgttctgataaccgat
gcttatcatgctctttataccaatcaaacggcaagacagcaaagggacaaagaatttcta
gataccatttcaaaacatcttgaagttgggggaaatgttctattaccagtagacactgct
ggtcgagtcctggaacttctcttgatacttgaacagcattggtcacaaagaggtttcagt
tttcccatttactttctcacgtacgtgtcatctagcactattgactatgttaagagtttc
ctcgagtggatgagtgactccatttcaaagtcctttgagacttcacgtgataatgccttt
ttattgaggcatgtcactctcttgataaacaagactgatctggataatgctccacctgga
ccaaaggttgttcttgcttccatgggtagtctcgaagccggttttgctcgtgatatattc
gtggagtgggcaaatgatcccagaaatttggtcctctttactgaaacaggccagtttggc
actttagctcgcatgcttcagtcagccccacctcccaaatttgttaaagtcaccatgtct
aagagggttcctttggctggggaagagttgattgcatatgaagaagagcaaaacagactg
aaaagagaagaagctttgcgagctagccttgtcaaagaggaggaaacaaaagcctcccat
ggatcagatgataattcaagtgaacctatggtcatagataccaagactactcgcgatgtt
gttggttctcacgggcctgcatataaagatatattgattgatggatttgttcccccatcc
agcagcgtagctccaatgttcccattctttgataacgcatgtgaatgggacgaatttggg
gaggttattaatccagatgactacgtgatcaaggatgaagacatggaccgaggagcaatg
cataccggaggtgatgtggatggaaggcttgatgaggcaaccgctagtctcatgcttgat
acaagaccttcgaaagtcatatccaacgagctcatcgtgactgttagttgttcacttgtt
aaaatggactatgaaggtcggtctgatggccgctcgatcaagtcaatgattgcacatgtt
tctcctcttaaacttgttctggtgcatgcgatagctgaggctacagagcatttgaagcaa
cactgcttgaacaacatctgtccgcacgtgtacgctcctcaaatagaggaaacagtcgat
gtgacttctgatttatgtgcttacaaggtccaactttctgaaaagctgatgagcaatgtg
atcttcaagaagctgggagattcggaagtagcttgggtggattctgaagtagggaagaca
gagagcgacatgaggtctctacaaccgatggccggcgctgcatctccacacaaacctgtt
ctagtaggtgatctgaaaattgcagacttcaagcagtttctgtcaagcaagggtgttcag
gtagagtttgcaggtggaggagctttacgttgtggagaatatgtcactctacgtaaggtc
ggcccgactggtcaaaagggaggagcatcgggtccacagcaaattctgatagaaggaccc
ttgtgtgaagactactacaaaatcagggattatctctattctcaattttaccttctctga
DBGET
integrated database retrieval system
