Camelina sativa (false flax): 104736532
Help
Entry
104736532 CDS
T05044
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
csat
Camelina sativa (false flax)
Pathway
csat03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104736532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104736532
03036 Chromosome and associated proteins [BR:
csat03036
]
104736532
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
104736532
Coactivators
SAGA/TFTC/STAGA complex
104736532
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
104736532
STAGA complex
104736532
TFTC complex
104736532
SAGA complex
104736532
SLIK complex
104736532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
eIF2A
Cytochrom_D1
Beta-prop_DCAF12
RAB3GAP2_N
Nucleoporin_N
WD40_like
LisH
FdhD-NarQ
Motif
Other DBs
NCBI-GeneID:
104736532
NCBI-ProteinID:
XP_010454835
LinkDB
All DBs
Position
13:12334156..12339447
Genome browser
AA seq
667 aa
AA seq
DB search
MDPEQINEFVVGYLKKKGFSSAAKDLEDFHHQNNGSSLSPIDYHNDPELTKLIRSFSQQE
DDPTRYRECYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSFR
KDHEMVHLRDLQKLEGVLAPSHLEEMEFARSLRKSKVNIKICQYSYDLLLQYLHRTESTL
MLGIINEHINFQVYSGQPTSSSDDIEAVTIVGSFQDTANHINQKEIQWGLLEDSLEDRLE
KTGGLLSDSEKGQGESKDDADDSKKRSTETGKQGSSIKKLKKDKAGNATAKVARLETSTV
PPTPRVKPELALPVMSTDVEQSILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCASISH
DGSLVAGGFSDSSIKVWDMAKIGQTGSGALQGENDTNDPTIAPNGRRNYTLLLGHSGPVY
SATFSPPGDFVLSSSADTTIRLWSTQLNANLVCYKGHNYPVWDVQFSPFGHYFASCSHDR
TARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIG
HRSMVLSLAMSPDGRYMSSGDEDGTIMMWDLSTARCITPLMGHNSCVWSLAYSGEGSLLA
SGSADCTVKLWDVTSSTKSTKAEEKNVSSNRLRSLRTFPTKSTPVHALRFSRRNLLFAAG
AISKPAS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggatccagagcaaatcaacgagttcgttgtaggttacttgaagaagaaaggcttcagt
agcgctgcgaaagacctggaagactttcatcaccagaacaatggtagcagtttgagtcct
atcgactaccataacgatcctgagctcaccaagctcattcgctccttttcccaacaagaa
gatgatccaactcggtaccgtgagtgttacagcaaactaaggtcatgggcttataattca
ctggatttatataagcatgaattgctccgagtgatgtatcctgtgtttattcattgttac
atggatctggtgggaaaagggcacactcaagaggcaagagccttctttaatagcttccgc
aaagatcatgaaatggtacacttacgggatcttcagaaactggaaggcgttcttgctcca
tctcatctagaggagatggagtttgctcgttctcttagaaaaagcaaggtcaacatcaaa
atttgtcagtattcatatgatctgttacttcagtatctacataggacagaatcaacttta
atgcttggtattataaacgagcacatcaatttccaagtctactcgggacagcctacttcc
tcatccgatgacatagaggctgtcaccattgttgggagttttcaagacacagctaatcac
atcaatcaaaaagaaatacagtggggattgcttgaagactcgctagaagatcgccttgag
aagactggaggtctactgtctgattctgagaagggacaaggagaaagtaaagacgatgcg
gatgatagtaagaaaagatccactgaaactggaaagcaaggctcttcaataaaaaagtta
aagaaagacaaagcgggaaatgcaacagcaaaggttgcacgtctggagaccagcacagtg
ccaccaacgccacgtgtaaaaccagaacttgccttgccagtaatgtctacagatgtagag
caatctatccttgaagacctgagaaaccgtgtgcagttgagtagtgttgcaatgccatct
gtcagcttttatacatttgttaatactcataacggtttaaactgtgcatctatatctcat
gatggatctctggttgctggtgggttctcagattcatcaataaaggtctgggacatggct
aagataggacaaactggcagtggtgctttgcagggtgaaaatgatacaaatgatccaacc
atagcaccaaatggcagaagaaactatacattattactgggtcactcagggcctgtttac
tcggccacttttagtcctccaggagattttgttttgtcttcttcagcagatacaacaata
cgactctggagcacacaattaaatgccaatcttgtgtgctacaagggtcataattaccct
gtatgggatgtccagtttagcccttttgggcattactttgcaagctgttctcatgatcgt
actgcacggatttggtcaatggatcgaatacaacctctccgaataatggcagggcatcta
tccgatgtcgattgtgtacagtggcatcccaattgtaactacattgcaaccggctctagt
gataagacagttagactctgggacgtgcaaacaggggaatgtgtccggatattcattggg
cacaggagtatggttttatcattggcaatgtctccagatgggagatatatgtcatccggt
gatgaagatggcaccataatgatgtgggacctatcaacagctcgctgcatcacacctctc
atgggccataactcatgtgtctggagtctcgcttacagcggtgagggctctcttctggcc
tctggatctgcagactgcacagtgaaactgtgggacgtcacctcaagtactaaatcaaca
aaggccgaggaaaagaatgtgagctcgaacagattgcgctcactcaggactttccccacc
aagtccacaccagttcatgctctccgattttctcggaggaatttgttgtttgctgcagga
gcaatctctaaacccgcaagctga
DBGET
integrated database retrieval system
