Camelina sativa (false flax): 104736741
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Entry
104736741 CDS
T05044
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104736741
09123 Folding, sorting and degradation
03018 RNA degradation
104736741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104736741
03041 Spliceosome [BR:
csat03041
]
104736741
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104736741
mRNA degradation factors
5'-3' decay
Lsm complex
104736741
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
104736741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
104736741
NCBI-ProteinID:
XP_010455092
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Position
13:complement(14300354..14302544)
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AA seq
129 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGMEDGGARGRGRGTSMGKMGG
NRGAGRGRG
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttcgctcctcaaaactgctcaagggcatccgatgcttgtggagcttaag
aatggagagacctacaatgggcatttggtgaattgtgatacttggatgaacatccatcta
cgtgaagtcatctgtacatcaaaggacggagacaggttttggagaatgcccgaatgttat
atccgtggtaacacaatcaagtatctccgagttcctgatgaggtgattgataaagtacag
gaggagaaaacccgcacagataggaaaccaccaggggttggacgcggaagaggacgtggt
atggaagatggaggggccagaggccgaggccgaggaacttcaatggggaagatgggtggt
aacagaggagcaggtcgtgggcgtggttaa
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