Camelina sativa (false flax): 104737012
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Entry
104737012 CDS
T05044
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104737012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104737012
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104737012
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104737012
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
104737012
NCBI-ProteinID:
XP_010455415
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All DBs
Position
2:24748769..24753287
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AA seq
616 aa
AA seq
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MSNLHSSLNGSASNLPDGSGRSFAASYSGQSGAPSPSFHHTGNLQGLHNIHGSYNVGNMQ
GTLTSRNSSMNSIPSPGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHAGIPNRGGLN
VVGNPGFNSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITNSMGNMVGG
GNLGRNISSGGLSIPGLSSRLNLAANSGSGINVQGQNRMLGGVLPQGSQVMSMLGNSYHT
GGGPLSQNHVQSVNNMMLSDHSNDSSLFDINNDFPQLTSRPGSAGGTQGQLGSLRKQGLG
VPLAQQNQEFSIQNEDFPALPGYKGGNSDYPMDLHQKEQLHDNAMSMMHSQNFSMGRSGG
FNLGATYSSHRPQQQQPQHASSTGGLQGLGLRPLSSPNAVSSIGYDQLIQQYQQHQNQSQ
FPVQQMSSINQFRDSEMKSGQSEADPFCLLGLLDVLNRSNPELTSLALGIDLTTLGLDLN
STGNLYKTFASPWTNEPAKSEVEFTVPNCYYATPPPPLTRASFKRFSYELLFYTFYSMPK
DEAQLFAADELYERGWFYHKELRLWFFRVGEPLVRQATHERGTYEYLDPNSFKTIRKEHF
VVKYELMEKRPSLLQH
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccttcattcatctctcaatggttctgcttcgaatttaccagatgggtcgggc
agatcttttgctgcttcttattctggacaatctggtgcaccatctccctcttttcatcat
accggaaaccttcagggacttcataatattcatgggagctataatgtcgggaacatgcaa
ggtacacttacatcaagaaactcaagtatgaatagtataccatctcctggggttcaacaa
cctaacgggagtttttccagtggacgatttgcttcaaacaatctacctgttaatctctcc
cagttgtctcatggtagctcacatgggcatgcgggaatcccaaatagaggaggtcttaat
gttgttggcaaccctggattcaatagtaacgcaaatggagttggtggttctattcctgga
attctctctacatctgcaggactcagtaatcgtaatagtgttccagggatgggaatatcc
caattgttgggaaattcaggtcctcgaataacaaattcaatgggaaacatggttggtgga
ggtaacttggggaggaatattagctctggtgggttgtctattcctggtctgtcttcacga
ctaaatttggcagcaaatagcggatcaggaataaatgttcagggacagaaccgaatgctg
ggtggagtacttcctcaaggatctcaggtcatgtctatgctggggaactcctatcatact
ggtggtggcccactttctcagaaccatgttcagtcagttaacaatatgatgctcagtgat
cactctaacgacagctctctttttgacatcaacaacgattttcctcagctcacaagtcgt
cctggatctgctggtggcactcaaggacaactaggttcattaaggaaacaaggtttagga
gtcccacttgcccaacaaaaccaagagttcagcattcaaaatgaagactttcctgcccta
ccgggatataaaggtggtaattctgattatcctatggatttgcatcagaaagaacaactc
catgacaatgctatgtcaatgatgcactcgcaaaacttttctatgggtagatctggtggt
ttcaacttgggggcaacatattcatcacatcgtccacaacaacaacaaccacaacatgct
tcatccactggtgggctacagggtcttggtcttagaccactaagctctcccaatgcagtt
tccagtattggttatgaccagcttattcagcagtatcagcagcatcagaatcaatcccag
tttcctgtgcaacagatgtcatcaatcaaccaatttagagattctgagatgaaatcggga
cagtcagaggcagatcctttttgcttgcttggcttgttagatgtgctaaacaggagcaac
cctgaattgacctcacttgctcttggcatagacttgacgacgctaggcttagatttgaat
tcaacgggaaatctctacaagacatttgcgtccccttggaccaatgaaccggcaaagagc
gaggtcgagttcacagtaccaaattgttactacgccacaccacctccaccgttgactcga
gcaagtttcaaaaggttctcctatgagttattgttctacacattttacagtatgccaaaa
gatgaagcacagctattcgcagcagatgaactttatgaaagaggttggttttaccacaag
gaactcagattatggttcttcagagttggggaacctttagtcaggcaagctacgcatgaa
aggggaacatacgagtacctcgatccaaattcgttcaaaacaatccgaaaggaacatttt
gttgtcaagtacgagctcatggaaaagagaccaagcttgctgcagcattga
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