Camelina sativa (false flax): 104737344
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Entry
104737344 CDS
T05044
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104737344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104737344
03019 Messenger RNA biogenesis [BR:
csat03019
]
104737344
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104737344
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104737344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
104737344
NCBI-ProteinID:
XP_019090244
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All DBs
Position
13:21134107..21139764
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AA seq
840 aa
AA seq
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MESEKLLDPRLLSINSSTTTNTTGRKTMSVELPQKPPPPPSLLDRFKALLNQREDEFGGG
EEVLPPVMDEIVQLYEVVLGELTFNSKPIITDLTIIAGEQREHGEGIANAICTRILEAPV
EQKLPSLYLLDSIVKNIGRDYVRYFSSRLPEVFCLAYRQAHPSLHPSMRHLFGTWSSVFP
PPVLRKIEVQLQLSSATNQQSSLGASEPTQPTRGIHVNPKYLRRLEPSAAESNLRGINSS
ARVYGQNSLGGYDDFDDQLESPSSLSGPRSGTAGSVALSSSVIGADGFPKRFIDGAIPSN
QAFKYGVGRPTGRDDEHMEWRRKENLGQGNDHERPRALIDAYGIDTSKHVTINKPIRDMN
GIHSKMVTPWQNTEEDEFDWEDMSPTLDRSRAGEYLRSSNPALGSVRARPRVGNTSDFHL
DSDIKNGGSHQLRENWNLSQNFPHSSNRVNTRAGKDLKVLTSSMGLVSSNSEFGAPPFDS
IQDINSRFGRALPDGTWPHLSVRGSNSLPVPSAHLHHLANPGNAMSNRLHGKPLYRPENQ
VSQSHLNDINQQNQMPVNYLPSSSAMNPRPMQSLLPHVSHGYPPQGSTIRPSLSIHGGEA
MHPLSSGVLSQIGSISQNASLGASSQQPGGAFSGLIGSLMAQGLISLNNQPTGQGSLGIE
FDADMLKIRNESAISALYGDLPRQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKNHKQNPS
RKWFVSGSMWLSGAEALGAEAVPGFLPTEPTVEKKDDEEMAVPADEDQTSCALCGELFED
FYSDETEEWMYKGAVYMNAPDGSTEDLDKSQLGPIVHAKCRPESNGGDMEEGIQRKKMRS
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagagaaactcctcgacccaaggcttctttcgattaatagcagcaccaccacc
aacaccactggtcgcaaaacgatgtccgttgagttgccgcagaaaccgccgccaccgccg
tcgttgcttgacagattcaaggctctgcttaatcagcgtgaagatgagttcggtggtggt
gaggaggttttgcctccggttatggatgagattgttcagctttatgaggttgttttggga
gagcttacttttaattccaagcctattattactgatctcactattatcgctggtgaacaa
cgggaacacggtgaaggaatcgctaatgccatttgcactcgaatccttgaggctccagtt
gagcaaaagttgccttctctgtatctattagacagcatcgttaagaacattggacgggat
tatgttcgttatttctcatcccgtctaccagaggtcttctgtctagcatacaggcaagcg
catccgagtttacatccttcaatgcgccatctgtttgggacttggtcaagtgtttttcca
ccgcctgtactacgcaagattgaagtgcaattgcaactttcatctgcaacaaaccaacag
tcttcgttaggggcttctgagcctactcaaccaactaggggcattcatgttaatccaaaa
taccttcgtaggctggagccctcagctgctgaaagtaatttgagaggcataaattctagt
gcaagagtgtatggccaaaattcactcggtggatatgatgattttgacgatcagttagag
agcccatcttccttgtctggaccaaggtctggtacagctggaagtgtggccctctcgtct
tctgtaattggagcagatggttttcccaagaggttcattgatggagctattccttctaat
caagccttcaaatatggagtgggtcgacctactggcagagatgatgaacatatggaatgg
cgaagaaaggaaaacttaggacaaggaaatgatcatgaaagacctagagctttgatagat
gcatatggaattgacaccagcaaacacgtaaccatcaataaaccaattcgcgatatgaat
ggcatccacagtaagatggttacaccatggcagaacactgaggaagatgagttcgattgg
gaagatatgagccctaccctagatcgtagcagagccggtgaatatttgcgatcatctaac
ccagcattaggaagtgtaagggcaagacccagagtaggaaacacgagtgattttcattta
gattctgacattaagaatggtggaagtcatcaactacgagaaaactggaatttgtcacaa
aatttcccccattcatccaaccgtgttaatacaagagcaggaaaggacttgaaagtattg
acttcgtctatgggattagtctcatcaaacagtgaatttggtgctcctccatttgatagc
attcaagatattaactcacgttttggtcgtgctcttcctgatgggacgtggccccatttg
agtgttagaggatccaactctctccctgtaccttcagcgcacttgcatcatttggcaaat
cctggtaatgcgatgtcaaaccgcttgcatggtaagcctttatataggcccgagaaccag
gtctcccagagtcatcttaatgatataaatcaacagaatcagatgccagttaattatttg
ccttcttcatctgctatgaatccaaggccaatgcagtctttgttaccccacgtaagtcat
gggtaccctccacaagggtcgaccattagaccatccttatcaatccatggtggggaagcc
atgcatcctctttcatcaggggttttatctcaaataggatccatctctcaaaatgcttct
ctgggagcctctagtcaacagccgggcggcgcattctctggtctgattggctctctcatg
gctcaaggtttgatttcgttgaacaatcagcctactggtcagggatcattgggaattgag
tttgatgcggacatgctcaagatacgtaatgagtctgcaatcagtgctctatatggggat
ctccctaggcaatgcacaacatgtggtctacgcttcaagtgccaagaagagcacagtaag
cacatggattggcatgtaaccaagaacaggatgtccaagaatcataagcagaatccttct
cggaaatggtttgtaagtggtagtatgtggcttagtggtgcagaggcacttggagctgaa
gcagtaccagggttcttacccacagagccaacagtagaaaagaaggatgatgaagagatg
gcagttcctgcagatgaagaccaaacttcatgtgctttatgtggtgagctatttgaagac
ttttatagtgatgaaactgaggaatggatgtacaaaggggcggtgtacatgaatgctcca
gacggatcaacagaagatttggacaagtctcagttaggtcctatagtgcatgctaagtgc
aggccagagtcaaatgggggtgatatggaagagggtattcagagaaaaaagatgcggagt
tag
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