Camelina sativa (false flax): 104737712
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Entry
104737712 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104737712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104737712
03036 Chromosome and associated proteins [BR:
csat03036
]
104737712
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104737712
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104737712
mRNA degradation factors
5'-3' decay
Decapping complex
104737712
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104737712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104737712
NCBI-ProteinID:
XP_010456256
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All DBs
Position
13:complement(23683187..23686843)
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AA seq
503 aa
AA seq
DB search
MNNRGRYPPGSGAGRGAINPNPNYQSRQGYYQQQPQPQYVQRGGYAQNHHQQAPSQPHQY
QQQQQQQQWLRRAQIPSGGNSNGDAVVEVEKTVQSEVIDPNSEDWKAKLKLPAPDTRYRT
EDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKT
AAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDD
IMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLP
ENRQILMFSATFPVTVKAFKDRFLTNPYVINLMDELTLKGVTQFYAFVEERQKIHCLNTL
FSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL
VCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYR
IEQELGTEIKQIPPHIDQAIYCQ
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatcgaggaaggtatcctcctggaagtggcgctggccgtggtgccattaaccct
aaccctaattaccaatcacggcagggttattatcaacagcaaccacagccacaatacgtt
cagcgcggtggttacgctcagaatcaccaccaacaagcgccgtctcagccacaccaatac
caacagcaacagcaacaacaacaatggcttcgaagagctcagatcccctccggcggtaac
agtaacggtgatgcagttgtagaagttgagaaaactgttcagtccgaagttatcgaccca
aattcggaagattggaaggctaagctaaaactacccgcacctgatactcgctacagaaca
gaggatgtgacagccaccaaagggaacgagtttgaagattattttttgaaacgggagctt
ctcatgggaatttatgagaagggttttgaaagaccttctcctattcaggaagagagtatt
ccaattgccttaactggtagagatatccttgccagagcaaagaacgggactgggaagact
gccgccttttgtattcctgtcttggaaaaaattgaccaagataacaacgttattcaagct
gttataattgttccaactcgagaattagcccttcagacatcacaggtgtgtaaggagctg
ggtaagcatttgaagattcaagtcatggtgaccacagggggaaccagtctgaaagacgat
attatgcgtttgtatcagcctgtccatttactggtaggaactcctggcagaattcttgat
cttaccaagaaaggtgtttgtgttttgaaagattgttcggtgctcgttatggatgaggcg
gataagcttttgtctcaagagttccaaccttcagtggaacatttgattagctttcttccg
gaaaatcgacagatattgatgttttcagccacgtttcctgtcactgtcaaggcttttaag
gatagatttctgacgaatccttacgtcatcaatctcatggatgaacttacgctcaagggt
gttacccaattctatgcattcgtagaagaacgacagaagattcattgcttgaatacacta
ttttccaagctgcaaattaaccaatcaatcatattctgtaattctgtaaaccgtgtggag
ctcttagctaaaaaaatcacagaacttgggtattcgtgcttttacatccatgcaaagatg
cttcaagaccaccggaacagagtgttccatgactttcgcaatggtgcatgccggaatctt
gtgtgtactgacttattcacacgtgggattgacatccaagcagtcaatgtggtgataaac
tttgatttccccaaaaatgcagaaacttatctccatagggttggtcgatcaggaaggttt
ggccatcttggtttagctgtgaatcttatcacctatgaggaccgatttaacctttaccga
attgaacaagagcttggaacagagattaagcaaattcctccacatatcgatcaggcaatt
tattgccaataa
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