Camelina sativa (false flax): 104737841
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Entry
104737841 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104737841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104737841
03012 Translation factors [BR:
csat03012
]
104737841
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104737841
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104737841
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104737841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
T2SSE
ATPase
AAA_19
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104737841
NCBI-ProteinID:
XP_010456399
LinkDB
All DBs
Position
13:1861848..1869327
Genome browser
AA seq
1126 aa
AA seq
DB search
MRFTKRINLLLGQTTRIYTRSLLGNPSLYRTFTVGPVSSSPAFLISSRSGDGVTGLFYPI
HRRFIGHTAEQFSDDEYECEFEEHKASSSVANVDEWKWKLSILLANGSEQEIVSRDKRDR
RDYEQISNLAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGL
LQEHLDRQQLLSGKANEGVADSQPPKQTEELPDDSSDSFLDGSVMEKVLQRRSMRMRNMQ
RTWQESPEGRTMLEFRKSLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILESE
IESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMRGKNTHLLFCT
SGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLILMSATLNA
ELFSNYYGGAPTIHIPGFTHPVKAHFLEDVLEITGYKLTSFNQVDDYGQEKTWKTQKQLM
PRKRKNQITTLVEDALTKSNFESYNSRTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGA
VLVFLTGWDDIRSLSDQIKAHPLLGDPNRVLLLMCHGSMATAEQRLIFERAPPNIRKIVL
ATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRLLPG
ECYHLYPKCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVDSIAEFLSAALQAPESLAVQN
AIGFLKMIGALDEKENLTDLGKLLSILPVDPKLGKMLIMGAIFRCFDPILTIVSGLSVRD
PFLLPQDKKDLALSAKLRFSAKDYSDHMALVRAFEGWKDAEREGSAYEFCWRNFLSAQTL
QAIHSLRKQFNYILKEAGLVHDDSALNNKLSHNQSLVRAIICSGLFPGIASVVHRETSMS
FKTMDDGQVSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLILFGGALS
TGVQVGHLKMLDGYIDFFMDPNLADSYVKLKEELDKLLQKKLEDPSMDIHKEGKYLMLAV
QELVAGDQCEGRFVFGRDTKRPSQPQIGENKHSKDGTNPKSLLQTLLMRAGHSPPKYKTK
HLKTNEFRALVEFKGMQFVGKPQRNKTLAEKDAAVEALAWLTHTSD
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcacgaaacgaataaacctcttgttggggcagacgaccaggatttatactcgt
tctctattgggaaatccatctttatacaggacctttaccgttggtccggtctctagttcg
ccggcgtttctgatttcgagtcgcagtggggatggtgtcacgggattgttctacccaata
catcgtcgtttcattggtcacactgcggaacagttctccgatgatgaatacgagtgtgaa
ttcgaggaacataaggcttcatcttctgtggccaatgttgatgagtggaagtggaagtta
agtattctgttggccaatggtagcgaacaagaaattgtttccagagacaaaagggatcga
agggattatgagcagatttcaaatcttgccaagagaatgggactgtatagtgaaatttac
gggaaagtggtggttgcaagcaaggttcctcttccaaactaccggccagatttggatgat
aagcgaccacaacgggaggtggtacttcctttgagtttgcaaagaagggtagagggactt
ctccaggaacaccttgatagacagcagctactctcaggaaaggctaatgaaggtgtagct
gattctcaacctcctaaacagactgaagaacttcctgatgacagttctgattcgtttctc
gatggttctgttatggaaaaggtacttcagaggaggagtatgcggatgcgcaatatgcag
agaacctggcaggaatctcctgagggaaggacgatgctggaattccggaaatctttgcct
tcatttaaggacaaagaaagacttcttcaagctattgctcgaaaccaggtaatagttgta
tctggggagactggatgtggtaagacaactcaacttccccaatacattttggaatcagag
atagaatctggtcgaggagcattctgcaacatcatttgtacacaacctaggagaatatct
gccatggcagtttcagaaagagtgtcagctgaaagaggagaacctcttggtgaaacggtt
gggtttaaagttcggctagaaggaatgagaggaaaaaatacccatcttctattttgtaca
agtggtatcctacttagacgtctgcttagtgatcgcaatttgaatggtgtaacacatgta
tttgttgatgaaatccatgaaaggggcatgaatgaagatttcttaattatagtgttaaag
gagcttcttccacggcgtccagatctgagattgattctcatgagtgccactttaaatgct
gaactcttttctaattattatggaggggcaccaaccattcacattcctggcttcacacat
ccagtgaaggcacattttttggaggatgtactggaaataacgggatataagttgacctct
ttcaaccaagttgatgattatggtcaagaaaagacgtggaaaacgcaaaaacagttaatg
cctcgcaaaagaaaaaaccagatcactactcttgttgaggatgctctcaccaagtcaaat
tttgaaagctataactctaggacacgtgattcactttcgtcttggatgcctgactgcata
ggatttaatctcattgaggctgttctctgtcacatctgtcgaaaagaacgtccaggtgct
gtattagtatttttgacaggatgggatgacatcagatccctgagcgaccaaatcaaagcc
catcctctcttgggggatcccaatagggtcttactattgatgtgccacggctcaatggca
actgctgaacagagactcatttttgagagggcacctcctaatattcgaaaaattgttctt
gctacaaacatggcagaagctagtattacaataaacgatgtagtttttgtggttgactgt
ggcaaagcaaaagaaaccacctacgatgctttgaacaatacaccttgtttgctaccctcc
tggatatctcaagcttctgctcgacagagaagaggaagagctgggcgtctgcttcccgga
gaatgctatcacttgtaccccaaatgcgtctatgatgcttttgcggagtatcaactacct
gaacttctgagaactcctttaaactctctctgcctgcaaattaaaagtcttcaggttgat
agcattgcagaattcctatcagctgcacttcaggctccggagtctttggctgttcaaaat
gctattggattcctgaaaatgattggcgcactggatgaaaaggaaaatctaacggatctt
ggaaaactcttatcgattctccccgttgatccgaagctggggaaaatgctgataatgggt
gccatcttccgctgctttgatccgatcctgacaattgtatcagggctcagtgtcagagat
cctttccttctacctcaagacaaaaaggacttagctttatcagccaagttgagattctcc
gccaaagactacagtgaccatatggcacttgttcgtgcctttgaagggtggaaagatgct
gaaagggaaggatcggcttatgagttctgttggaggaatttcctgtcagctcagacgctt
caggcaatacattcgctgaggaagcagttcaactatattctgaaagaagctggattagta
catgatgattcagctctcaacaacaagctaagtcacaaccagtccctggttcgtgctatc
atttgctctggcctattccccggaatagcatctgttgtgcacagagagacttccatgtca
tttaaaacaatggatgatggccaagtatcactatacgcgaattctgttaattcgcggttc
ccaacaattccatacccttggctagtctttggagagaaagtaaaggtcaatgctgtgctc
atacgggactccactggtgtccctgattctagtttgatactttttggtggtgcactgagc
actggagtacaggtgggacatcttaaaatgcttgacgggtacattgatttcttcatggat
ccaaatttggctgattcctatgtaaagctaaaggaagagctagataagcttcttcaaaaa
aagcttgaagatccaagcatggacatccacaaagaaggaaagtacctcatgcttgcagtt
caagaactcgtggcgggagaccaatgcgaagggagatttgtctttggtcgtgacacaaag
aggccaagccaaccgcaaataggtgagaacaaacactccaaagacgggacaaacccgaag
agtctccttcagacacttttgatgagagcgggacactcgcctccgaagtacaagacaaaa
catctaaagacaaacgaatttagagcactagtggagtttaaagggatgcagttcgttggt
aaacctcagaggaacaaaacgctggctgagaaagatgcagctgttgaggccttagcttgg
ttgactcatacctctgat
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