Camelina sativa (false flax): 104737917
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Entry
104737917 CDS
T05044
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104737917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104737917
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104737917
Spliceosome [BR:
csat03041
]
Complex C
Other components
Step II factors
104737917
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
RRM_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
Rcat_RNF216
zf-RING_UBOX
AAA_22
zf-C3HC4_2
zf-C3HC4
IBR_1
zf-RING_2
ResIII
zf-RING_5
KH_Vigilin
AAA_19
WHD_HA2
nSTAND_NTPase5
ABC_tran
AAA_29
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
104737917
NCBI-ProteinID:
XP_010456466
UniProt:
A0ABM0VI09
LinkDB
All DBs
Position
13:<4162719..4168707
Genome browser
AA seq
1742 aa
AA seq
DB search
NHRPTWNHHQHHSHYPNPNFPPNYRRDRAPSPVISSTRPNFIVQLLHPGINAAAKREEIK
SLALLCEVPDESVHVPQFGCVAGSFSFRQWVDARSAVVALWEYRLRGEHDFVPELVPNIV
VPSDMYELKDRLRDLFSAHVISLMENGEGVKKVEVEIDEKTRQVESFSSKKGLKFEVFEK
KKAVESERYLVVKRLEEFKNAMKCIVRFLKGKDGYESGGGGEEEDVAVFSLEGDYDWRRI
HSLIRRECRRLEDGLPIYAYRRNILKRVHGEQITVLIGETGSGKSTQLVQFLADSGVAAG
ESIVCTQPRKIVSMTLADRVREESSGCYEENTVRCTPTFSSTEQISSKVVFMTDNCLLQH
YIKDRSLCGISCVIIDEAHERSLNTDLLLALLKELLCTRVDLRLVIMSATADACQLSDYF
FGCGKFLVNGRNFPVEIVYSPCDTEETSAVGGIASYVGDVVKMAVEIHKTEKEGTILAFL
TSQAEVEWACERFIAPSAVALPLHGKLSMEEQFRVFRNYTGRRKVIFATNIAETSLTIPG
VKYVIDSGMVKESKYEPRTGMSILKVCQVSQSSARQRAGRAGRTEPGRCYRLYSKNDFDS
MNLNQEPEIRRVHLGVALLRILALGVDNIADFDFVDAPVPEAIAMAVQNLVQLGAVVKKN
GVLELTQEGHCLVKLGLEPKLGKLILGCFRYRMGKEGIVLAAVMANVSSIFCRVGNLDDK
LKADRLKVQFCNHNGDLFTLLSVYKEWASLPRERRNKWCWENSLNAKSMRRCEDTVKELE
ICIERELTLVTPSYWVWNPSAGTKHDKHLKMVILASLAENVAMYTGYDQLGYEVALTGQQ
VQLHPACSLLAFGQKPSWVVFGELLSIVDQYLVCVTAFDFEALYTLDPPPPFDASQMDER
RLRVKKVVGCSSTVLKRFCGKSNRSLLSIVSRARSLCRDERICIQVDVDQNAILLYAPPL
DMEKVSALVNDALECEKKWMRNECLEKYLFHGRGQVPIALFGSGAQIKHLEVDQRFLTVD
VLYYGDNVVDDRELLMFLEKRIDGCICSIHKFPANKQDCDEKEKWGRLTFLTPESAMKAA
EIQKFDFNGSVLRLFPSLSTSGGMFKMPSFPSVTAKIIWPRRESTGRGCLRFPSGDIHSK
FGGISNLEIGTNSAHIQRDQKSNDSILICGLDSDLSETEVLDVLELKTGIRDLNFFIFRK
NSVQCASPTACEEELYKRIFAHMSARNPEPNCVKVQVFEPKEKDYFMRAYITFDGRYHLE
AAKALQELNGQVLPGFLPWQKIKCEQLFQSSIVCSSSIYNTVKRQLNVLLACFERQRGGD
WRLEPTYSGAYRVKICAYATRPIAEMRRELEELVRGRPINHPGLTPRVLQHLMSRDGINL
MRKIQQETETYIVLDRHNLTVRICGSSQKIAEAERELVQSLVAYHESKQLEIHLRGPDIR
PDLMKEVVRRFGPELQGIKEKVHGVDLKLNTRYHVIQVHGSKEMREEVQKMVNELAREES
AMGGKPDDIEVECPICLSEVEDGYSLEGCSHLFCKACLFEASMRNFDAFPILCSHVDCEA
PIVLADMRALLSQQKLDELFRASLSSFVTSSDGKFRFCSTPDCPSVYRVAGPQESGEPFI
CGACNAETCTRCHLEYHPLITCERYKLFKENPDLSLKDWAKGKDVKECPVCKCTIEKTDG
CNHLLCRCGKHICWTCLDVFTQAGSCYAHLRTIHGGIGGVGDLVDLDIPLAELGIPIGIP
RP
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
aatcaccgtcctacttggaaccaccatcagcatcactctcactaccctaaccccaatttc
ccgcctaattacagacgcgatcgggctccctcgccggtaatctcgtctactaggcccaat
ttcatcgttcagctgcttcacccggggattaacgccgccgctaagagggaagagatcaag
agtctcgctttgctctgcgaagtcccggatgaatctgttcatgtgcctcagttcggctgt
gtcgccggaagtttcagttttcgtcagtgggtcgacgcgcgttctgcggtagtggctctt
tgggagtatcggcttcgaggggagcatgattttgttcctgagctggttcctaatattgtt
gttccttctgatatgtacgagcttaaagacaggcttcgtgatcttttctcggctcatgtg
atttcgcttatggagaacggagaaggcgtcaagaaggtggaagttgagattgatgagaaa
actcgtcaagttgagtctttttcgtctaaaaagggtcttaaatttgaggtttttgagaaa
aagaaggctgttgagtcggagagatatttggttgtgaagcggcttgaagaattcaagaat
gctatgaagtgtattgtgagattcctcaaaggcaaagacgggtatgagtctggtggagga
ggagaagaagaagatgttgccgtgtttagtttggaaggggactatgattggagacgtatt
catagtttgattcgtagggagtgtagaaggctagaggatggactacctatatatgcctac
cgccggaatattttgaagagggttcatggtgaacagataacagtactaattggagaaact
ggttcagggaagagcactcagttggttcagttccttgctgattctggagttgctgctggt
gagtctattgtttgtacacaaccacggaaaattgtttccatgaccttggctgatcgggtc
agagaagaaagcagtggttgttatgaggaaaacactgtccgttgtactccaactttttca
tctacggagcagattagttccaaagttgtattcatgacagataattgtctgcttcaacac
tacatcaaagataggagtttatgtggcatttcatgcgttattattgatgaagcccatgaa
agaagcttaaatacagaccttcttctggcattgctcaaggagttgctatgcacaagggtt
gacctaaggcttgtcatcatgtctgccacggctgatgcctgccaactttcagactatttc
ttcggttgtggaaaatttctggtcaatgggaggaacttcccagtggagattgtatattcc
ccttgtgacacagaggagacttctgctgttggcggcattgcttcatatgttggcgatgtt
gttaagatggctgtggaaatacataaaactgagaaagaaggaaccatccttgcattcttg
acttcccaagccgaggtagaatgggcatgcgaaaggtttatagctccgtctgccgttgct
ttgcctttgcatggaaagctttcgatggaagaacaatttagggttttccggaactatact
gggagacgaaaagtgatatttgccacaaatattgcagagacgtcactgactattcctggt
gtcaagtatgtaattgattctgggatggtcaaagagagtaaatatgaacctagaacgggt
atgagcatcctcaaggtgtgccaggtcagtcagagttctgctcgacaacgtgctggtcgt
gctggaaggacagaacctggaagatgttacagactgtactcaaaaaacgattttgattca
atgaatcttaatcaggaacctgaaattcggagggtccatcttggtgtagcacttttgagg
attcttgctctgggagtagacaacatagcagattttgactttgttgacgcacctgtcccg
gaagccattgcaatggctgtccaaaaccttgttcagctgggtgccgtcgtaaagaaaaat
ggtgttcttgaattaacacaggaagggcattgtttagtcaagctgggtctggagccaaag
cttggaaagttaattttaggctgctttagatacagaatgggcaaagaggggattgttctt
gctgctgtcatggctaatgttagtagtatattttgcagagttggcaacctcgatgataag
ctgaaagctgatcgcctaaaggtgcaattctgcaatcacaatggagacctgttcactctt
ctttcggtgtacaaagaatgggcatctctgccacgagagagaagaaataaatggtgctgg
gaaaatagcctgaatgccaaatcaatgaggagatgtgaagacacagtcaaggaactggag
atatgcattgagagagaacttactcttgtcactcctagttactgggtttggaatccaagt
gcgggtactaaacacgacaagcatttgaaaatggttatacttgcatctcttgcagaaaat
gtggcgatgtacactggctatgatcagcttggatatgaggtggcattgactggtcaacaa
gttcagttacatccagcgtgttcattgctagcattcgggcagaagccaagctgggttgtt
tttggtgaacttctatcgattgtggaccagtacttggtatgtgtaactgcatttgatttt
gaggctttgtatacgcttgatccaccaccaccttttgatgcatctcagatggatgagcgg
aggctccgagtgaaaaaagtggttggttgtagcagcactgtgctaaaacgattttgtggg
aaatctaatcgtagtctgctttcaattgtttctcgtgctaggtctctttgtagggatgaa
aggatttgtattcaagtcgatgttgatcagaatgcgattctactgtatgcgcctccactc
gacatggaaaaagtgtccgcccttgtgaacgatgcattggaatgtgaaaagaaatggatg
cgtaatgaatgtttggagaagtatctatttcatggtcggggacaagtacctattgcactg
tttggatctggtgctcagataaagcatcttgaagttgatcagagatttttgacagtcgat
gtactttattatggcgacaatgttgttgatgacagagagcttctgatgtttctggagaag
aggattgatgggtgtatttgctctattcataagtttcctgcgaacaaacaagactgtgat
gagaaggagaagtggggaagactaacctttctcacgcctgaatctgctatgaaggcagca
gaaattcagaaatttgatttcaatggatcagttcttagattatttccatcgctgtcaact
agtggaggaatgttcaagatgccttctttcccttccgtgacagctaagattatctggccg
cgaagggaaagcactggtagaggatgtcttaggttcccttctggagatattcacagtaaa
tttggtgggatctccaaccttgagataggaacaaattctgcccatattcaaagagatcaa
aaatccaatgattctatcttgatatgtgggcttgacagtgatctttcggaaacagaagtt
ttagatgttttggagttgaaaactgggattagagatctgaattttttcattttcagaaaa
aacagtgtgcagtgtgcatctcctactgcttgcgaagaagagttgtataagagaatattt
gcgcatatgtcagcaaggaatccagagccaaactgtgtcaaagttcaagtttttgaacca
aaagaaaaagattatttcatgcgagcatatattacttttgacgggagatatcatttggaa
gctgcaaaagctttgcaggagttaaatggacaggtgctacctggatttcttccatggcag
aagattaagtgtgaacaattgtttcagagctccatagtctgctcctcttctatctacaac
actgtcaaaagacaattgaatgttttattagcatgctttgagagacaacgagggggtgac
tggcgtctggaaccaacttatagcggtgcttatcgtgttaaaatttgtgcttatgcaaca
agacccattgcagagatgcgaagagaacttgaagaactcgtaagaggaagacccataaac
catccaggcttaacccctagagtcctgcagcatcttatgtccagggatggtattaatctg
atgcggaagatccaacaggagactgaaacttacattgtattagacaggcacaatctcaca
gtacgcatttgtggatcaagtcagaaaattgccgaggctgaacgagaactggttcagtca
cttgtggcttatcacgagagcaagcaacttgaaatccatctccgaggtcctgatatccgt
cctgacctcatgaaggaagtggtgaggcggtttggtcccgagctccaaggtatcaaagaa
aaggtacatggtgtggatctgaagctcaacacccggtaccatgttattcaggttcatggg
agcaaagaaatgagggaggaagtacaaaagatggtcaatgaactagcacgagaagagagt
gcaatgggtggaaaaccagatgacatagaagttgaatgccccatttgcttgtctgaagtc
gaagatggctattctcttgaaggatgttcacacctcttctgtaaagcttgtttatttgag
gcatcgatgagaaactttgacgcattcccaatactttgttctcacgttgactgtgaagct
ccaatagtactagctgatatgagagccctcttatcacaacagaagctcgatgaactcttc
cgagcatccttgtcctcctttgtaacatctagcgacggaaagttccggttttgctccaca
cctgattgcccttccgtctaccgtgtagctggacctcaagaatcgggagagccattcatc
tgtggagcatgtaacgcagaaacatgcacaaggtgtcacctcgagtatcacccgttaatc
acatgtgaaaggtacaaactgttcaaggaaaatccggacttgtcgctaaaggactgggca
aaagggaaggatgtaaaggagtgtccggtttgcaagtgcacgatagagaaaactgacggg
tgtaaccatctgctgtgccgttgtggaaagcacatttgctggacttgcttagacgtcttc
actcaagcaggatcttgttatgcccatttaaggacaattcatggcggaatcggcggggtt
ggtgatctcgtggatcttgatatccccttagcagagctcggtattccaatcggtatcccc
aggccttga
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integrated database retrieval system
