Camelina sativa (false flax): 104737994
Help
Entry
104737994 CDS
T05044
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104737994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104737994
03009 Ribosome biogenesis [BR:
csat03009
]
104737994
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104737994
Spliceosome [BR:
csat03041
]
Complex A
U2 snRNP components
U2 related factors
104737994
Complex B
104737994
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104737994
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
90S particles
Helicases
104737994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
ABC_tran
AAA_19
nSTAND3
SRP54
AAA_7
ATPase
PhoH
TsaE
AAA_24
AAA_30
T2SSE
AAA_29
AAA_16
FtsK_SpoIIIE
AAA_23
Motif
Other DBs
NCBI-GeneID:
104737994
NCBI-ProteinID:
XP_010456537
LinkDB
All DBs
Position
13:complement(6360547..6362589)
Genome browser
AA seq
680 aa
AA seq
DB search
MKKTYSGRYFEILEKRKNLPVWVHKEEFLKTLKENQIVLLVGETGSGKTTQIPQFVLEAV
LNENPSSGPKGKKWLVGCTQPRRVAAMSVSRRVAEEMDVEIGDEVGYTVRFDDCSSSKTV
LKYLTDGMLLREAMADPLLGRYKVIVLDEAHERNLATDLLFGLLKQTLVRRPDLKLVVMS
ATLEADKFLKYFIGVPLIKVPGRLYPVEILYTREPQRDYLEAAINTIIQIHEFEPPGDVL
VFLTGEEEIEDTCSRITSKLGDQVNVMPLYSTLSPAMQQKIFDPTPDPVRKIVVSTNIAE
TSLTIDGIVYVVDPGFSKQKLYHPNTRVESLLVSPISQASADQRAGRAGRTQPGKCFRLY
TEKSFKELEKQTYAEILRSNLANTVLTLKILGVENLLHFDLIDPPAPETLSRALDDLYHL
GALDDECNLTKTGEMMSEFPLDPQMAKMIIVSPQFNCSNEILSVSAMLSVPNCFIRPRGE
AQKAADKAKSMFSHIDGDHLTLLNVFHAFLQHNQKPDWCYENFINYRAMKSAVSVREQLV
RIMSRFQIKLCSPDFNSRDYYVNIRKALLAGYFMQVAHLERTGHYLTFRDKDDQVVNLHP
SNCLDYKPEWVVYNEYVFTSRNFIRTVTYIQGEWLVDIAPDYYQPANFPNSEAKRVLQRH
YKKRRLSEERSCKIFCASNS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagacgtattccggaaggtatttcgaaatactggagaaacggaagaatctacca
gtgtgggttcacaaagaggagtttctcaaaactttgaaagagaatcagatagtgttattg
gttggtgagaccggaagtggtaaaacaacgcagatccctcagtttgttttagaggcggtg
ctcaatgaaaaccctagctctggtcctaaggggaagaagtggttggttggatgcacgcaa
cctcgtagagttgcagcgatgtctgtttcccgtcgtgtagccgaagagatggatgtagag
atcggggacgaagttggttacacggtccgtttcgatgattgcagcagctccaaaacggtg
ctcaagtacctaaccgacggtatgcttctaagagaagcaatggcggatcctctcttaggg
agatacaaagtgattgttctcgatgaggcgcatgagagaaatttagccacggatttgctt
tttggtcttcttaaacaaaccttggttcgtcgacctgatcttaagctggttgtaatgagt
gcaaccctagaagccgataagttcctcaagtattttattggtgtgcctcttattaaagtc
cctggcaggctttatccagtggagatcttgtatactcgagaaccccagagggactatctc
gaggctgctataaatactattatccagattcacgagtttgagccacctggtgatgttctt
gttttcttaaccggggaagaagagattgaagatacttgcagtagaatcaccagtaaactt
ggtgatcaagtcaacgttatgccattgtattccactctttcgcctgctatgcaacagaag
atattcgatccgacaccggatccagtgagaaagattgttgtctccaccaacattgcagag
acttctttaaccattgatgggattgtatacgtggttgatcctggtttctccaaacagaag
ctctaccacccaaacactcgtgtggagtccttgttggtgtctccaatatcacaggcaagt
gctgaccagagagcaggtcgtgctggtagaacacaacctggaaagtgcttcaggctttac
acagagaaaagttttaaagaattggagaagcagacgtatgctgagatattgagatcaaac
cttgcaaatacagttctgaccttgaaaatactgggtgttgaaaacttgctgcactttgat
cttatagatcctcctgctcctgagaccctctctcgggccttggacgatttgtatcatttg
ggagcattggacgatgaatgtaacttgacaaagacaggcgagatgatgagtgagtttcca
ttagacccacagatggcaaagatgatcatagtcagtccccaattcaactgctcaaacgag
attctttcggtttctgcgatgctttcagtacccaattgttttatcaggccaagaggagaa
gctcaaaaagcagcagataaagctaagtctatgttttcacacattgacggagatcacctc
acactcttgaatgtgttccatgctttcttgcaacacaaccaaaaaccagattggtgctat
gaaaacttcatcaactacagagcaatgaaatctgcagttagtgtaagagaacagctggtc
cggatcatgtcgaggtttcagattaagttgtgcagccctgatttcaacagccgagactac
tacgtcaacataagaaaggccttgcttgccggttatttcatgcaagtggctcacctagaa
cgcactggccattacttgactttcagagataaggacgaccaagtggttaacttgcatcct
tccaattgcttggattacaaaccagagtgggtggtttacaacgagtatgttttcactagc
cgaaatttcatccgaactgttacgtatattcagggtgaatggctagtagatatcgcaccg
gattactatcagcctgccaacttccccaactctgaggccaaacgagtccttcaaaggcac
tataagaagagaagactgtcagaagaaaggagttgtaaaatcttttgcgctagcaattct
taa
DBGET
integrated database retrieval system
