Camelina sativa (false flax): 104738826
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Entry
104738826 CDS
T05044
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104738826
09123 Folding, sorting and degradation
03018 RNA degradation
104738826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104738826
03041 Spliceosome [BR:
csat03041
]
104738826
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104738826
mRNA degradation factors
5'-3' decay
Lsm complex
104738826
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
104738826
Complex C
U2 snRNP components
104738826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF1256
DUF150_C
Motif
Other DBs
NCBI-GeneID:
104738826
NCBI-ProteinID:
XP_010457337
UniProt:
A0ABM0VJW7
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Position
14:complement(1096378..1097701)
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AA seq
93 aa
AA seq
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MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTKVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttttcttacttcaaggatttggttggacaagaagtgacggttgagctcaag
aacgatttagctatcagaggaactcttcactcagttgatcagtatctgaacatcaagctc
gagaatactaaggttgttgaccaggacaagtacccacacatgctttcagtgagaaactgt
ttcatcagaggatccgtggtaaggtacgtgcagttacctaaagatggagtcgatgttgat
ttacttcacgatgccgctagaagagaagctaggggtggctga
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