Camelina sativa (false flax): 104738831
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Entry
104738831 CDS
T05044
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104738831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104738831
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
104738831
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
104738831
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
S1
EXOSC1
Motif
Other DBs
NCBI-GeneID:
104738831
NCBI-ProteinID:
XP_010457344
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All DBs
Position
14:1104903..1106650
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AA seq
324 aa
AA seq
DB search
MVMRKLQLPLSQTQKVRFERGIERLQSLSSTANSDASVIVTDAIPVNHDDAFLKGHGTSE
VDGELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGV
LMLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLE
KGQLLKVDPYLVKRSKHHFHYIESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDEKDEEMI
SSSAENTGKEQIHTLLETRQTICRIGNAIRVLSNLGFTVTLEIIMETVNLSNSKNVDIHD
MLGSEFHVVVAENEAERRRTKRKK
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgagaaagctacagttaccgttaagccaaacgcagaaggttaggtttgagaga
ggaatcgagcggcttcaatcactgtcatcgacggcaaactctgacgcttctgttatcgtc
accgatgctattcccgtcaaccacgatgatgccttcctcaagggacacggaacttctgag
gtagatggtgagttgctcgcgacggtttgtggagtagtggagcgtgtggataagctcgta
tatgtacgaaccctacgagcaaggtacaagcctgaggttggggatattgtggtaggccgt
gtcattgaggttgctcaaaaacgttggagagtggagctcaactttaatcaggatggagta
ctaatgctttcttccatgaacatgcctgatggtattcagaggcgaagaacttctgtggat
gaactcaatatgcggaatatatttgtagagcatgatgttgtttgtgctgaagtccgcaac
tttcagcatgatggtagcttgcagttacaagccagaagccagaagtatggcaagctcgag
aagggacagcttctgaaggttgatccttacttggtcaaaagaagcaaacatcactttcat
tacatcgaaagccttggtattgatttgatcattggctgcaatggtttcatatgggttgga
gaacacgtggaagtgagagatcctatggcgatagatgatgagaaagatgaggagatgatc
tcatcctccgccgagaacacaggaaaagagcaaatccatacattactcgagacacgacag
accatatgcagaatcgggaatgcaatacgcgtcttgtctaatctaggcttcacagtgact
cttgaaataatcatggagactgttaacctcagcaactcaaagaatgttgacatacacgac
atgcttggatcagagtttcacgttgtggttgcagagaatgaagctgaaagacgacgtaca
aagaggaaaaagtga
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