Camelina sativa (false flax): 104738919
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Entry
104738919 CDS
T05044
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104738919
Spliceosome [BR:
csat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
104738919
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
UTP6_C
TPR_12
TPR_10
TPR_16
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
104738919
NCBI-ProteinID:
XP_010457436
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All DBs
Position
14:1454686..1459832
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AA seq
764 aa
AA seq
DB search
MGDSETMVAEGYTSASYGDYNASAAAVESTGQETAPNVDPSHSVTNDALVNGTAHEGGLT
APAENGVVTAPAAELGENPGSALSPEEERLWNIVKANSLEFNAWTALIDETERIAQDNIA
KIRKVYDAFLAEFPLCYGYWKKYADHEARVGAMDKVVEVYERAVQGVTYSVDIWLHYCTF
AINTYGDPDTIRRLFERALVYVGTDFLSSPLWDKYIEYEYMQQDWSRVAMIYTRILENPI
QNLDRYFSSFKELAETRPLSELRSAEESAAAAACVDASESAPSASGGKADEGQSQADGST
EQSPKLESAGSVDPEELKKYVGIREAIYTKAKEFESKIIGFEMAIRRPYFHVRPLNVAEL
ENWHNYLNFIEKDGDFNKVVKLYERCVVACANYPEYWIRYVLNMKENGSTDLADNALARA
TQVFVKKQPEIHLLAARLKEENGDIAGARAVYQLMHSEISPGLLEAVIEHANMERRLGNL
DDAFTLYEQVIAVEKGKEHSPILPLLYAQYSRFSYLVAGDAEKARRIVVEALDHLQPSKP
LMESLIHLESILPPPRKIDYLEPLVEKFIKPDADTQNTASSTEREELLLIYIEFLGLFGD
AKCTNKAKDLHAKLFLSHRSTSELKKRSADDFLSSDRTKMAKTYNGTPPAQPVANAYPNS
QTQWSGGYAAQPQTWPPTQAAPAQPQQWNPAYGQQAAYGAYGGYPAGYTAPPAPTPVPQA
AAYGAYPAQTYPTQSYAPPAAPVAAPVQQPAAAAAPQAYYNTYY
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagcgagaccatggttgctgaaggatatacttctgcttcatatggagattat
aatgcttctgctgcggctgtagaatccactgggcaagagactgcaccaaatgttgatccg
tcacactcggtcactaatgatgctttggtcaatggaactgcccatgaaggtggccttact
gcgccagctgagaatggagttgtaacagctccagcagcggaacttggagagaatcctggc
tctgctctctcaccagaagaggagcgcttatggaatatcgtaaaggctaattccttagag
ttcaatgcttggactgccctgattgatgagacggagaggatagctcaggacaatatagca
aaaatccggaaggtgtatgatgctttcctagctgaattccctttgtgttatggctattgg
aaaaagtatgcggatcatgaggctcgagtgggggcaatggacaaggtcgtggaggtttat
gaaagagcagtgcagggagtgacatattctgtggacatctggttgcattattgcactttt
gccatcaacacatacggagatccagacacaatcagaaggctttttgaacgagctttggtt
tacgttgggactgatttcctttcctctccattgtgggacaaatacatcgagtacgagtac
atgcagcaggactggagccgagttgccatgatttacaccagaatattggagaatccaatt
caaaatcttgatagatatttcagcagctttaaggaactagctgagacacggcctctgtcg
gaactaaggagtgctgaggaatctgctgcagctgctgcttgtgttgatgcttctgagagt
gcaccatctgcgtctggtggaaaggcagatgaaggtcaatctcaggctgatggttccacc
gaacaatcccctaaactggaaagtgctggttcagttgatcctgaggagttgaagaaatac
gttggcatcagagaagccatatatacaaaagccaaagagtttgaatccaaaatcattggt
tttgaaatggctataaggaggccctatttccatgtgcggcctctcaatgtcgctgagctg
gagaattggcacaattatctgaatttcatagaaaaggatggagacttcaataaggtcgtc
aagctgtatgaaagatgtgtggttgcctgtgcaaattacccagaatactggatccgatat
gtattaaacatgaaagaaaatggaagtaccgaccttgccgacaatgcccttgctcgagca
actcaagtctttgtcaagaaacaaccagagattcaccttttggctgctcgactgaaagag
gagaatggggatatagctggtgcgagagctgtataccagttaatgcactctgaaatttct
cctggacttcttgaagcagtaatcgaacatgcgaacatggaacgccgactaggtaatctg
gatgatgctttcactttgtatgagcaagtaattgctgttgaaaaggggaaagaacattcc
ccaatactgccacttctgtatgctcagtattcaaggttttcatacttggttgccggggat
gctgagaaagctaggaggattgtagtcgaagcacttgaccatttacaaccgtcaaaacct
ctcatggaatcactgattcatttagaatcgatcctgccaccaccaagaaagattgattac
cttgagccgcttgtcgaaaaatttatcaagccagatgctgatacccagaacactgcgagt
tccactgagagggaagagctactgttaatatatatagagttcttgggtctttttggagat
gcgaagtgcactaataaagcaaaagatctgcatgcaaaactttttttatctcatcggagc
acatcagagctgaaaaagcgcagcgcagatgattttctctcgtcagataggacgaaaatg
gcgaaaacttacaatggcactccacctgcccagccagtagccaatgcatatccaaattct
cagactcaatggtctggtggttatgcggcgcagcctcagacttggccaccaacacaagca
gctcctgctcaaccgcaacaatggaaccctgcttacggtcaacaggctgcttatggtgca
tatgggggatatcccgccggctacacggctccaccagcaccaacacctgtgccacaggct
gctgcttatggtgcatatcctgctcagacatacccgacacagagctatgctcctccagca
gcaccagtggctgcgccggtgcagcaacctgctgctgctgctgctccgcaagcttactac
aacacgtactactga
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