Camelina sativa (false flax): 104739086
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Entry
104739086 CDS
T05044
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104739086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csat03400
]
104739086
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
104739086
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
DEAD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
104739086
NCBI-ProteinID:
XP_019090912
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Position
14:complement(2239903..2245627)
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AA seq
716 aa
AA seq
DB search
MLWEELAFCSKSIDVSNELPSNMEEILIDETPAAQCKKGNHNLVLDLEVGLKCMNCGFVQ
REIRSMDESEWGEKITRERRRFDRFDEEENSNILGKLGFEAPNTNSLHEDCVSSEGTVWD
KIPGVKSQMYPHQQEGFEFIWRNLAGTIMLNELKDFENSEETGGCIMSHAPGTGKTRLTI
IFLQSYLACFPDCKPVIIAPASLLLTWAEEFKKWNISIPFHNLSSLEFTGKESSAALGLL
MQKNATARTNNEIRMVKIYSWIKAKSILGISYNLYEKLAGVKDEDKKTKMVREVKPDKEL
NDIREILMGRPGLLVLDEAHTPRNQRSCIWKTLSKVETQKRILLSGTPFQNNFQELCNVL
GLARPKYLEKLTSTLKKSGMTVTKRGKRALGNEINNRGIEELKAVMLPFVHVHKGSILQR
SLPGLRECVVVLNPPELQKRVLESIEVTHNRKTKNVFETEHKLSLVSVHPSLVSRCKLSE
KERLSIDEALLAQLKKVRLDPKQSVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKH
LVSRFNWNPGEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSEGISLVGASR
VILLDVVWNPAVERQAISRAYRIGQQRIVYTYHLVAKGTPEGPKYCKQAQKDRISELVFA
CSSRPDKGKEKIAEAVTEDKVLDTMVQRSKLGDMFDNLIIQPKEADLVEGFNILMP
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgggaagaactagcattttgcagtaaatctattgacgtcagcaacgagcttcct
tcaaatatggaagaaatattaattgatgaaactccagcagcacaatgtaaaaaagggaat
cacaatctggttcttgatcttgaggttggtttgaagtgtatgaactgcggctttgtgcag
agagaaatccgaagcatggatgaatctgagtggggagagaagatcacaagggaaaggaga
agatttgatagatttgacgaggaagaaaatagcaacatccttgggaaacttgggtttgaa
gctcctaacacgaacagcttacatgaggattgtgtttcttctgaaggaaccgtttgggat
aagatcccaggggtcaaatctcaaatgtatcctcaccagcaagaaggttttgagtttatt
tggaggaacttagctggtacaatcatgttgaacgagctcaaggactttgagaatagcgaa
gaaaccggaggatgcatcatgtcacacgctcccgggacaggaaaaactcgcctgaccatc
attttcctgcaatcctacctagcatgcttcccagattgcaaaccagtgatcattgctcct
gcaagcttgcttctcacgtgggcagaggagtttaagaaatggaacataagcattcccttt
cataatctcagcagtttggagtttactggaaaagagagctcagcggcgctaggacttttg
atgcagaagaatgccactgctagaaccaataatgagataaggatggtgaaaatatactct
tggataaaagcaaagagcatactcgggatcagctacaacctctatgagaagcttgcagga
gttaaagacgaggacaaaaagacaaagatggtgagagaagtgaaaccagacaaagaatta
aacgatatcagagagatacttatgggaaggcctggactgctggttcttgatgaggcacac
acgcctagaaaccagagaagttgtatctggaaaacactatctaaagtggaaacacagaaa
cgtatcttgctttctggaactccttttcagaacaacttccaggagctgtgcaatgttctg
ggactcgcaagacctaaatatctggagaagctcacatccacactcaagaagagtgggatg
actgtaactaaaagaggaaaaagagctttggggaacgaaatcaacaaccgtgggatcgaa
gagttgaaggctgttatgcttccatttgtgcatgtccataaaggaagcattcttcaaagg
agcctccctggtttgagagaatgcgttgtggtgttaaacccacctgagctgcagaagaga
gtcctagaatccattgaagtcactcacaaccggaaaacaaaaaacgtgtttgaaacagaa
cacaagctgtctctggtctcagtccatccttctctagtctctcgctgcaaactctctgag
aaggaacgtttgtccatcgacgaggctttgcttgcacagcttaagaaggtaagactcgat
ccaaagcaaagtgtgaaaacgagattcctcatggagttcgttgagttatgcgaggtgata
aaggagaaagtgttggtcttcagccaatacatagacccattgaaactgatcatgaaacat
ctggtctctcgtttcaactggaatccaggggaggaagtgttgtacatgcatggcaagctc
gagcaaaaacaaagacaaaccttgatcaacgaattcaatgatccaaaatccaaggcaaaa
gtgttcttagcttcaacaaaagcctgctctgaagggatcagtctggtaggagcgtcaagg
gtgattcttttggatgttgtgtggaatccggcagtcgaaagacaagctataagccgtgct
tataggatcggtcagcagaggattgtttacacatatcacttggttgcaaaaggaactcct
gaggggccaaagtactgcaaacaagcacagaaggatagaatctcggagctagtgtttgca
tgctcgtcgagacctgacaaaggaaaggagaagattgctgaagctgtgacagaggataaa
gtattggacactatggtgcagcgttcgaagcttggggatatgtttgacaatctcataatc
caaccgaaggaagcagatttagttgaaggtttcaacatacttatgccatga
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