Camelina sativa (false flax): 104739222
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Entry
104739222 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH2-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104739222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104739222
03012 Translation factors [BR:
csat03012
]
104739222
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104739222
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104739222
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104739222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
HA2_C
Ank_2
HA2_N
FXR_C1
Ank_5
AAA_19
AAA_22
ATPase
Motif
Other DBs
NCBI-GeneID:
104739222
NCBI-ProteinID:
XP_010457806
LinkDB
All DBs
Position
14:2775677..2783142
Genome browser
AA seq
1302 aa
AA seq
DB search
MQVVLIAGETGCGKTTQVPQYLLDHMWYSKQEACKIICTQPRRISAISVSDRISWERGET
IGKTVGYKVRLQSEGGRGSSVVFCTNGILLRVLIGKGVNSCVPDITHIIVDEIHERDSYS
DFMLMILRDLLPSNPHLRLILMSATLDAERFSEYFGGCPVVRVPGFTHPVRTYFLEDALS
VLISDKNNHLLSADSNLPSNKHDFKDEEKVALDEAIDLAWTNDEFDCLLDLISSEGSHEV
YNYQNLTTGLTPLMVFAGKGRVSDVCKLLSFGANCTLKSKEGITALEVAEKENQIETAQI
IREHADNIQSNSQQAQVLLDKYMATMKPEEVDVGLIVKLMKKICSDSKDGAILVFLPGWE
EIRKTKEKLLENPHFADSGKFSILCLHSRVPAEEQKKVFDRPRRGCRKIVLATNIAESAV
TIDDVVYVIDSGRMKEKSYDPFNDVSTLQSSWVSKANAKQRAGRAGRCQPGVCYHLYSKL
REASLPEYRVPEVKRMPVDELCLQVKMLDPNCDVNDFLQKLMDPPVAQSIANALIILKDI
GALTPQEELTELGQKFGQLPVHPRISKMIYFAVLVNCLDPALILACAADEKDPFIMPLLP
GDRKKANAAKHELASLYGDHSDHLATVAAFQCWKNAKESGRANEFCSKYFISQIVMKRLD
DLCRKLQGELKRHGVIPSSSNCSLNAHDPGILRAVIAVGLYPMLGRMCPVSKNQTRSIVE
TITGAKVRVPSLSNNVDMSSTKYDEALIVFDEITRGDWGVQIRSCTVLPTLPLLLFSREI
AVSPTESYDADKSDDEEDHVVENVGDTMDIDKEGVRAGEKVMLAPENPVKVIVDRWLPFK
VTALEIAQMYIMRERLMASILFKVKHPKENMPPHLGASMYAIACILSYDSLARSSVQTVA
VQPIASVPDATSPKDDIPSANPNELQEHDPKTTPMGSKLANKLGLGNMEESVPSNLADRN
EQPDPNTARVEDVSAATQQKKIQSESKRCKSPNNVDLGNIEENLGSMEVNTPSDLANGNE
QKDPKSVCKLDLGREKESIPSNLAHGNEQRDPNTSQTEDASAAKQPEKKRSRSKRRKSGN
DMDLGMMETSKPSDLANGNELTEPKSANNLDLGNMEENMPSDLTKDNEQTELNLPNKSNY
GNMEESLPFNLANVNEQPDPSTTLMEAASSAKQPKNKRSRSKKHKSDNNLELGNIEENKP
SDLANGNERKEPKLVRRLDPDKEKESIPLNLVSGNEEPDPNTAPAAKKPKRKKRKLAKNF
DSGNSMEEKVPSTDGQQEQCGEKTERKSGNKSEKVSVPSNPV
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgcaggttgttcttattgctggtgaaactggttgtgggaaaactactcaggtgcctcaa
tatcttctagatcatatgtggtatagtaagcaagaagcgtgcaaaatcatttgcacccaa
ccacgtcgtatctcagctatttcagtttctgatagaatatcttgggaaagaggtgaaact
attgggaaaaccgtcggctacaaggttcgactgcaaagtgaaggtggaagagggtcatct
gttgttttctgtacaaatggcattctattgagggtgcttataggcaaaggcgtgaacagc
tgtgttcctgatataactcacattattgtggatgaaatccatgaaagggactcctactct
gatttcatgttaatgattttaagagacttgcttccatctaatcctcatctccgactgatt
ttaatgagtgctactcttgatgctgagaggttttccgaatatttcggaggttgcccggtt
gtccgggtgcctggattcactcatccagtccgaacctattttctggaagatgcactttct
gtcctgatatcagacaagaataatcatctactttctgctgactcgaacttaccaagtaac
aagcatgattttaaagatgaagaaaaagttgctttagacgaagcaatagacttggcatgg
acaaatgatgagtttgattgtctcttagatctaatttcttctgaaggaagtcatgaggtt
tacaattaccagaatttaacgaccgggctaacaccacttatggtctttgctggaaagggc
agggttagcgatgtctgcaagctcctttcatttggcgctaactgtacactgaagtccaaa
gaaggtataaccgcattagaagtggccgaaaaagagaatcaaattgaaactgctcaaata
atcagggaacatgcagataacatccagtccaattctcagcaagcacaagtcttacttgat
aagtatatggcgacaatgaaaccagaagaagtagatgtgggtcttatagtgaagttaatg
aagaaaatatgcagcgattcaaaagatggtgccattcttgtttttctacctggatgggag
gaaatcaggaaaacaaaagagaaattgcttgagaatccccattttgcagatagtggtaaa
ttcagtattctatgtcttcactcacgggttccggctgaggaacagaagaaagtttttgat
cgcccccgtcgaggttgtcgcaaaattgtgcttgcgaccaatattgctgaatcagcagtt
actatcgatgatgtggtttatgtgatagatagcggccggatgaaggaaaagagttatgac
ccttttaatgatgtgtcaacgctccaatcttcttgggtatcaaaagcaaatgcaaaacag
agggctggtcgagcaggccgttgtcaaccaggcgtttgttatcatctatattctaaactc
cgggaagcgtctttgcccgaatatagagttcctgaagttaagagaatgccagtggatgaa
ctctgcttgcaggttaagatgctggatccgaattgcgacgtaaatgatttccttcagaaa
ttgatggacccgcctgttgctcaaagtattgcaaatgccttaatcatccttaaagatatt
ggagcgttgactcctcaagaagagctgacagaacttggacagaaatttggtcagcttcca
gttcatcctcggattagcaagatgatttatttcgccgtattagtgaactgtttagatcca
gcacttattctggcatgtgcagccgacgagaaggatccgtttatcatgcccttgttgcca
ggtgatagaaaaaaagctaatgctgcaaaacatgaacttgcatcactttatggggaccat
agtgatcatcttgcgactgtcgcggcttttcagtgctggaaaaatgcaaaagaaagtggt
cgagctaacgagttttgttcaaagtacttcatctcccaaattgtaatgaagaggctggat
gatctgtgtcgcaagcttcagggagaacttaaaagacatggggtcatccctagcagttca
aactgtagcctgaatgctcatgatccgggtattctccgtgctgttatagcagtaggattg
taccctatgttgggaaggatgtgcccagtttccaagaaccagacaagatctatcgtagag
actattactggagccaaagttcgtgtgccctcgctatcaaacaatgtcgacatgtcctct
accaagtatgacgaagctttaattgtttttgatgagattactcgaggagattggggtgtg
cagataagaagctgcactgttcttcccactttacctttgttacttttttcaagagagata
gccgtgtctcctacagagagctatgatgctgataagagtgacgacgaggaagaccacgta
gtagaaaatgtaggagacacgatggacatagataaagaaggtgttagggctggagagaaa
gtaatgcttgcgccggaaaatccagtaaaggtaatagtggatcggtggctgcctttcaag
gttacagctcttgaaattgctcaaatgtacatcatgagagagaggctaatggcgtccata
ttgttcaaggttaaacatccaaaggaaaatatgccgcctcatctcggtgcttctatgtat
gcaatagcttgtattctctcatatgatagcctcgctcgatcttcggttcaaactgtagct
gtgcaacctattgcttcagtgccagatgcaacgagtcccaaagatgacataccttccgct
aaccccaatgagcttcaggagcatgacccgaaaactactccaatggggtcaaagctagcc
aacaagttgggtttgggtaatatggaagagagcgtgccttcaaatctcgctgataggaat
gagcaacctgacccaaacactgctcgagtggaagatgtttcagcggctacacaacaaaag
aagatacagtcagagtccaaaaggtgcaagtcgcccaacaatgtggatttggggaacatt
gaagagaacttggggagcatggaagtgaacactccttctgatctggctaatgggaatgag
caaaaagaccctaagtcagtctgcaagttggatctgggtagggagaaagagagcattcct
tctaatctcgcccatggaaacgagcaacgtgacccaaacacttctcaaacggaagatgct
tcagcggctaagcaaccagaaaagaagcgatcaaggtccaaaagacgcaaatcaggcaac
gatatggatttggggatgatggaaactagcaagccttccgatctggcaaatgggaatgag
ctaacagagcctaagtcagccaacaacttggatttagggaatatggaagagaacatgcct
tctgatctgactaaggataatgagcaaacggagcttaatctacctaacaaatctaattat
ggtaacatggaagagagcttgcctttcaatcttgctaatgtgaatgaacaacctgaccca
agcactactctaatggaagctgcttcatcggctaaacaaccaaaaaataagcgatcaagg
tccaaaaagcacaaatccgacaacaacctggagttggggaacattgaagagaacaagcct
tctgatctggctaatgggaatgagcgaaaagagcctaagttagtcaggcggttggatccg
gacaaagagaaagagagcattccactgaatcttgtcagtggtaatgaggaacctgaccca
aacactgctccagcggctaagaaaccaaaaaggaaaaaacgcaaattagctaagaacttt
gattcgggtaacagtatggaagagaaagtaccttctactgatgggcaacaagaacaatgc
ggtgaaaaaacagagcgaaagtcagggaacaagtcagaaaaagtgagcgtaccttccaat
ccagtgtga
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integrated database retrieval system
