Camelina sativa (false flax): 104739403
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Entry
104739403 CDS
T05044
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
csat
Camelina sativa (false flax)
Pathway
csat04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104739403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csat04131
]
104739403
Membrane trafficking [BR:
csat04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
104739403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
WD40_WDHD1_1st
Clathrin
WD40_CDC20-Fz
WD40
WD40_Prp19
zf_RING_Vps8
Beta-prop_EML_2
WDR55
zf-RING_2
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
EIF3I
ANAPC4_WD40
zf_RING_Vps8_fungal
PEP5_VPS11_N
Beta-prop_WDR11_2nd
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
WD40_like
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
104739403
NCBI-ProteinID:
XP_010458050
LinkDB
All DBs
Position
14:3460638..3466590
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AA seq
961 aa
AA seq
DB search
MASVPPENGVDGDDEREEDEEEEEEEEAEENGDEAEEEPRLKYQRMGGNVPSLLSNDAAS
CIAVAARMIALGTHDGTVHILDFLGNQVKEFRSHTAPVNDLNFDNEGEYIGSCSDDGSVV
INSLFTDDEKVKFDYHRPMKAISLDPDYTKNQLKRFVAGGLAGNLYMKSKSWFGSTDQVL
HSGEGPIHSVKWRGSLIAWANDAGVKVYDTAKKQRVTFIEKPRGSPRPEALLPHLVWQDD
TILVIGWGTSVKIASIKSDQQKPGTYRQIQMSSLNQVDIVASFQTSYYISGIAPFGDSLV
ILAYIPVEGDGEKKFSTTTTVSRQGNAQRPEVRIVSWNNDELTMDALPVHGFEHYKAKDY
SLAHAPFPGSSYAGGQWAAGDEPIYYIVSPKDVVIAKPRDAEDHINWLLQHGFHEKALAA
VEAGEGRTELVDKVGAGYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAQLRQLP
VLVPYMPTDNPRLKDTVYEVALVALATNPSYHKELLSAVKSWPRSVYSALTVISAIEPQL
NTSSMTDALKEALAELYVIDGQYQKAFLLYADLLKPEVFDFIEKYSLHEAIRGKVVQLML
LDCKRATVLFIQNRDLIPPSEVVQQLLKASKKCDSRYYLYLYLHALFEVSHDTGRDFHDM
QVELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDFLREQVFVLGRMGNAKQALAVIIN
KLGDIEEAVEFVSMQHDDDLWEELIKQCLNKPEMVGLLLEHTVGNLDPLYIVNMVPNGLE
IPRLRDRLVKIVTDYRTETSLRHGCNDILKTDIVNLLVKCFNEARRGVCLSNEEDDSRAK
REDNNRSFSQRTVVDKSLSIKMTEVKSRTRGDTRCCMCFDPVSIRGDTVVVFFCCHAYHM
TCLMDAAFSSSNNKTTKGSSGYEYSYGVDEEEEDEDDDGDRPGRSRLRCILCTTAAAESA
R
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggttccgcctgaaaacggcgtggacggtgatgacgaaagagaggaggatgag
gaggaagaagaggaagaagaagcagaagaaaacggagatgaggctgaggaggagccacgc
ctcaagtatcagcggatgggtggcaacgtaccttctttgctttctaatgacgctgcttcc
tgcatcgctgttgccgccaggatgatcgctcttggtactcacgacggcaccgtacatatc
ctcgatttcctcggcaatcaggttaaagaatttcgttcccacactgctccggttaatgac
ctcaactttgacaatgagggagagtacatcggaagctgttcagacgatggttctgtcgtt
ataaacagtcttttcactgatgatgagaaggtgaaatttgattatcatcgtcccatgaag
gccatttccttggaccctgattacactaaaaaccagttaaagaggtttgtagctggtggt
ttggctggtaacttgtatatgaaatccaagagctggttcggttctacagaccaggtgctg
cattctggggaaggtccaatccattctgtgaaatggagaggaagtcttattgcctgggct
aatgatgctggtgttaaggtttatgatacagccaaaaagcagcgtgttacttttattgaa
aaaccgcggggaagccccaggcctgaggctttgcttccccacttggtttggcaggatgat
actatccttgtgattggttggggaacatcagttaaaattgcttcaattaaatcagaccag
caaaaacctggaacttataggcagattcagatgtctagtctaaaccaagttgatatcgtt
gcttctttccaaaccagctattatatttcagggattgctccctttggtgattctcttgtt
attcttgcttatatacccgttgaaggagatggtgagaagaaatttagcaccaccactact
gtatcgcgtcagggaaatgcccagagacctgaagtacgcattgtatcatggaacaatgat
gaacttacaatggatgctcttcctgtacacggctttgagcattacaaggcgaaagactat
tcccttgctcatgctcctttcccaggtagtagctatgctgggggacagtgggcagctggt
gatgaaccaatatactatattgtttctccgaaggatgttgtgattgccaaacccagggat
gctgaagatcacattaactggctgttgcaacatggattccacgagaaagcccttgcagct
gttgaggctggtgaagggcgaaccgaacttgttgataaggtgggagctgggtatcttgat
catctgattgtcgaaagaaaatatgctgaagcagcatctttatgtcccaaattgttaaga
ggatctgcttcagcctgggagaggtgggttttccattttgctcaactacgccagctacct
gttcttgttccatatatgcctacggataacccaaggcttaaggatacagtgtatgaggtt
gctctagttgcactggcaaccaacccttcataccacaaggagcttttgtcagctgttaaa
tcgtggccacgttcagtatattctgctttgactgttatctcggcaatagagcctcagctg
aacacatcttcaatgaccgatgccctcaaagaggcgctggcagagctgtatgtaattgat
ggacagtatcagaaggccttcttgctatatgctgatcttctcaaaccagaagtgtttgat
ttcattgagaaatacagcttgcatgaggcaattcgtggaaaggtggtccagttaatgttg
cttgattgcaagcgtgccactgtcttatttatccaaaatagggatttgattcctccatct
gaagttgttcaacaacttctgaaagctagcaaaaaatgtgattcaagatattacctgtac
ttatatctgcatgcattatttgaagtcagtcatgatactgggagggattttcatgatatg
caggtagaactatatgcagaatacgatactaagatgctgcttccattcctacgtagcagt
caacattacaagttagaaaaggcatatgaactttgtgtcaagaaagattttttgagagag
caagtatttgtcctggggaggatgggaaatgcaaaacaagctcttgcagtcatcataaat
aaactgggggatatagaagaggctgtggaatttgtgtccatgcagcacgatgatgatcta
tgggaagagctgattaaacaatgtctaaacaagcccgagatggtgggcttgttgttggag
cacacggttggcaacctcgatcctctttacattgtaaatatggtcccaaatggcttggaa
atacctcgattaagggatcgattggtcaaaattgtaacagattacagaactgaaacatct
ctgagacacggttgcaatgatattctcaagacggatattgttaatcttctggtgaagtgc
ttcaacgaggctaggcgcggggtctgcctaagcaacgaagaagacgattcccgtgcgaag
agagaagacaataatcgctcattctctcagagaacggtagtagataaatctttgagcata
aagatgacagaggtaaagtcgaggacaaggggggatacacggtgttgtatgtgcttcgac
ccagtctcgataagaggggacaccgtggtggtcttcttctgctgccatgcttaccacatg
acatgcctcatggatgctgcattcagcagcagcaataacaagacaaccaaaggttcgtct
gggtatgaatacagctacggtgtggatgaagaggaagaagatgaagatgatgatggagac
agacctgggcggtcgcgtttacggtgcatattatgcactactgccgccgctgagtccgct
cggtag
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