Camelina sativa (false flax): 104740343
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Entry
104740343 CDS
T05044
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104740343
03015 mRNA surveillance pathway
104740343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104740343
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104740343
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_ACIN1
Motif
Other DBs
NCBI-GeneID:
104740343
NCBI-ProteinID:
XP_010459203
UniProt:
A0ABM0VPD9
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Position
14:complement(7857086..7860343)
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AA seq
415 aa
AA seq
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MAKLSRGRRSPSLSGSSSRSSSRSRSRSGSSPSRSLSRSRSRSRSLSSSSSPSRSVSSGS
RSPPRRGKSPAGPARRGRSPPPQSKGASSPSKKAAPTQESLVLHIGSLSRNVNEGHLKEI
FGNFGEVIHVELAIDRAVNLPRGHAYVEFKARADAEKAQLFMDGGQIDGNVVKASFTLPP
RRKVSPPPKPVSSAPKRDASKSDNAGAEIEKDGPRRPRDTSPQRKTVLSPRRRSPPLRRG
ASPRRLPDSPPRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGSPRRIR
GSPVRRRSPLPLRRRSPARRVRSPLRRSPIRRRSRSPIRRAGRSRSRSISPRRGRGPAGR
RGRSSSYSSSPSPRRIPRKVSRSRSPRRPLRGKRSSSNSSSSSSPPPPPPPPRKT
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaactaagtcgtggccgtcgttccccttccttgtctggctcttcttctcgttcc
agctccagatcccgttcccgctctggttcgagtccctctaggtctctttcgcgctcccgc
tcccgttctagatcgctctcttcatcttcatctccttcccggagcgtcagttctgggagt
cgtagtcctccacgccgtggaaaaagtcctgctggacctgctaggcgaggtcgctctcct
cctccacaatctaaaggagcctcatcaccttctaagaaagctgctcctactcaagaatct
cttgtcctccatattggttctcttagtaggaatgtgaacgaaggccatctcaaagaaatt
tttggcaactttggtgaagttatacatgtggaacttgcgatagatcgagctgttaatctt
ccaagaggacatgcctatgttgaattcaaggcaagagctgatgctgagaaagcgcagctg
ttcatggatggtggccaaattgatggaaatgttgttaaagcaagtttcacactaccacct
cgtcgcaaagtatctccaccccctaaacctgtctcaagtgcaccaaagagagatgcatca
aaatctgataatgccggtgctgaaattgagaaagatggtcccaggcgcccaagagataca
tctccgcaacggaaaacagtactttctccaaggaggagatcacctccactgaggagaggc
gcatcacctaggcgattgcctgattctccccctcgccggaggcctggatctcctatccgc
cgtcgtggtgatacaccacctagacgcaggccagcatcgccatctagaggccgttctcca
tcttctccccctccaagacgatatagatctcctccaaggggttcccctagaagaattcgt
ggcagtcctgttcgaagacggtctcctcttcctctaaggagaaggtcacctgcaaggaga
gtacgcagtcctctcagaagatccccaatccgcaggcgtagccgatccccaattcgtaga
gctggtcgctctcgttcaaggtccatctcaccccgcaggggacgaggtccagctgggaga
cgagggaggtcatcttcttactccagttcaccaagtcccagaaggattcctaggaaggtt
tcaagaagccgcagccctagaaggccactgagaggaaaaagaagcagcagtaacagcagc
agcagcagttcaccgccgccacctccacctccacctcgcaaaacttaa
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