Camelina sativa (false flax): 104740344
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Entry
104740344 CDS
T05044
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104740344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104740344
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104740344
mRNA degradation factors
5'-3' decay
Decapping complex
104740344
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Blo-t-5
Motif
Other DBs
NCBI-GeneID:
104740344
NCBI-ProteinID:
XP_010459204
UniProt:
A0ABM0VPE0
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Position
14
Genome browser
AA seq
768 aa
AA seq
DB search
MNGLGSGSSIEQASQSMDLKQIGDNSTGVFDASQYAFFGNHVVEEVELGGLEDQEEDLPL
AGKEEDFAFDKEEAEVSRTLFDADDLASTFSKLNRNPEKYRSTVPVAGNGSRQNYVGNGW
NHREELPNRYNQQSSDSEAIQDDIRWPSQPFPTPNLVEQRNLHRATSYPEPQHQQPPYQH
QQQFSSEPILVSDQHVGPHMGSPFPSSHPQLVGMHHESPQHTGNMPQLRPSLLVNNRPSA
QWMNRQNMFPGDSSGIMNNMLPQQQLSHQNGLMPQQQRIPKMQVPQSRLLHPMQPHGHLP
GMQPQPFNSHLSRSASSGSYDAMLGFGDQREARPGSGQGNRHNMRFPQQGFDGGLQRRNN
AWPPFRSKYMTADEIENILRMQLVATHSNDPYVDDYYHQGRLAKKSAGAKLKHHFCPNHL
RDLPSRARTNNEPHAYLQVDALGRVPFSSIRRPRPLLEMDPPNSNKSGNLDQKDTDKPLE
QEPMLAARVIIEEGLYLFLEVDDIDRFLEFNQLPDGGNQLRQKRQALLDGLAVSLQLVDP
LGKNGQNSGLASQDLVFLRITSLRKGRKLLTRYLQLLFPGNDLMRIVCMAIFRHLRSLFG
VRSSDAETTKTTIKLGKVVALCIHTMDLGPVSACLAAVSCSSEHPPLRPLGSPVGDESTI
ILKTALDRASELLSANNYNNAGMNLWRASFDEFFNLLMKHCISKYDSIMQNLNSQLLPHF
ATEMSDAAAQAIVREMPIELLRASFPHISDEQKRILLEFLKPGSQKIG
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtcttggctctgggagtagtatcgaacaagcttcccaatccatggatcttaag
cagattggagataattctacaggtgtcttcgatgcatctcagtatgctttttttggtaac
catgttgttgaggaggttgagctgggtggattggaagaccaagaagaggatttaccctta
gctggaaaagaagaagattttgcctttgataaggaagaggctgaagtttctagaactctt
tttgacgctgatgatcttgctagtacattttcgaagttgaataggaatcctgagaaatat
aggagcacggtacccgtagctggtaacggttcaagacagaattatgttggtaatgggtgg
aaccatagggaggagttgccaaatcggtataaccagcaaagttcagactctgaggccatc
caagatgacataaggtggccatcacagccttttcctactccaaatcttgttgagcaaaga
aacctgcatagagcaacatcatatcctgaaccacagcatcaacagcccccataccagcat
caacaacaattttccagcgaaccgattcttgtgtcagatcagcatgtaggccctcatatg
ggatcgccatttccaagttctcatcctcagttggttggcatgcatcatgaatcaccgcaa
cacactggaaacatgcctcaactgcgaccttctcttctcgtgaacaatcgcccctcagct
cagtggatgaatcgccaaaatatgtttcctggggacagttctgggatcatgaacaatatg
ttaccacaacagcagttatctcatcaaaacggtttgatgccgcaacagcaaaggatacct
aagatgcaggttcctcagagtaggttactacatccgatgcagcctcacgggcatttgcca
ggaatgcagcctcaaccatttaactcccacctttctcgatcagcgtcctcgggcagttat
gatgcaatgcttgggtttggtgatcagagggaagcaagaccaggatcgggtcaggggaac
agacacaacatgcgctttcctcaacagggttttgatggtgggcttcagaggagaaataat
gcatggcctcctttcaggtctaaatatatgacagctgatgaaatagagaacatcttgaga
atgcagcttgtagctacacatagcaatgatccttatgtagatgattattaccaccagggg
cgtcttgctaagaaatctgctggcgccaaactgaagcaccatttctgtccgaatcattta
agagaccttccatctcgcgcacgtactaacaatgagccccatgcatatcttcaggttgat
gctcttggtagagttcctttctcttcgatccgcaggcctcggcctctgcttgaaatggat
cctccaaattcaaataaatctggtaatctggaccagaaagatacagacaagccccttgaa
caagaaccaatgcttgcagctagggtgattattgaggaaggtctctacctcttcctcgag
gtagatgatattgaccgattcttagagttcaatcaactcccagatggtggaaaccagttg
aggcaaaagcgacaagctctgttggatgggcttgcagtgtcattgcagcttgttgaccca
cttggtaaaaacgggcaaaacagtgggcttgcatctcaggatcttgtctttctaaggatc
acctcccttcgaaagggccggaagctactcacaaggtacctccagcttcttttccccggc
aatgatctaatgcgaatcgtctgcatggctatttttagacacttaaggtctttgtttgga
gtgagatcatcagatgccgaaaccacaaaaacaacaatcaaacttggaaaagttgtcgcg
ttatgcattcacaccatggatcttggacccgtaagcgcttgtctagcagcagtttcttgt
tcttccgagcacccaccacttcgccctttgggtagccctgttggagacgagtctactatt
atactgaaaactgcactcgatagagcttccgagcttctcagtgctaacaattacaacaac
gcaggcatgaatctgtggcgtgcttcctttgatgagttctttaacttactgatgaaacac
tgcataagcaagtacgacagtataatgcagaacctgaattcgcaattgttaccacacttt
gccacagagatgtctgacgctgctgcacaagctattgtcagggaaatgcctatcgagctt
ctacgtgcaagtttcccgcacattagtgatgagcaaaagagaatacttttggaattcttg
aagcctggtagccagaaaatcggataa
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