KEGG   Camelina sativa (false flax): 104740344
Entry
104740344         CDS       T05044                                 
Name
(RefSeq) protein PAT1 homolog 1-like
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
csat  Camelina sativa (false flax)
Pathway
csat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104740344
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104740344
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104740344
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     104740344
SSDB
Motif
Pfam: PAT1 Blo-t-5
Other DBs
NCBI-GeneID: 104740344
NCBI-ProteinID: XP_010459204
UniProt: A0ABM0VPE0
LinkDB
Position
14
AA seq 768 aa
MNGLGSGSSIEQASQSMDLKQIGDNSTGVFDASQYAFFGNHVVEEVELGGLEDQEEDLPL
AGKEEDFAFDKEEAEVSRTLFDADDLASTFSKLNRNPEKYRSTVPVAGNGSRQNYVGNGW
NHREELPNRYNQQSSDSEAIQDDIRWPSQPFPTPNLVEQRNLHRATSYPEPQHQQPPYQH
QQQFSSEPILVSDQHVGPHMGSPFPSSHPQLVGMHHESPQHTGNMPQLRPSLLVNNRPSA
QWMNRQNMFPGDSSGIMNNMLPQQQLSHQNGLMPQQQRIPKMQVPQSRLLHPMQPHGHLP
GMQPQPFNSHLSRSASSGSYDAMLGFGDQREARPGSGQGNRHNMRFPQQGFDGGLQRRNN
AWPPFRSKYMTADEIENILRMQLVATHSNDPYVDDYYHQGRLAKKSAGAKLKHHFCPNHL
RDLPSRARTNNEPHAYLQVDALGRVPFSSIRRPRPLLEMDPPNSNKSGNLDQKDTDKPLE
QEPMLAARVIIEEGLYLFLEVDDIDRFLEFNQLPDGGNQLRQKRQALLDGLAVSLQLVDP
LGKNGQNSGLASQDLVFLRITSLRKGRKLLTRYLQLLFPGNDLMRIVCMAIFRHLRSLFG
VRSSDAETTKTTIKLGKVVALCIHTMDLGPVSACLAAVSCSSEHPPLRPLGSPVGDESTI
ILKTALDRASELLSANNYNNAGMNLWRASFDEFFNLLMKHCISKYDSIMQNLNSQLLPHF
ATEMSDAAAQAIVREMPIELLRASFPHISDEQKRILLEFLKPGSQKIG
NT seq 2307 nt   +upstreamnt  +downstreamnt
atgaacggtcttggctctgggagtagtatcgaacaagcttcccaatccatggatcttaag
cagattggagataattctacaggtgtcttcgatgcatctcagtatgctttttttggtaac
catgttgttgaggaggttgagctgggtggattggaagaccaagaagaggatttaccctta
gctggaaaagaagaagattttgcctttgataaggaagaggctgaagtttctagaactctt
tttgacgctgatgatcttgctagtacattttcgaagttgaataggaatcctgagaaatat
aggagcacggtacccgtagctggtaacggttcaagacagaattatgttggtaatgggtgg
aaccatagggaggagttgccaaatcggtataaccagcaaagttcagactctgaggccatc
caagatgacataaggtggccatcacagccttttcctactccaaatcttgttgagcaaaga
aacctgcatagagcaacatcatatcctgaaccacagcatcaacagcccccataccagcat
caacaacaattttccagcgaaccgattcttgtgtcagatcagcatgtaggccctcatatg
ggatcgccatttccaagttctcatcctcagttggttggcatgcatcatgaatcaccgcaa
cacactggaaacatgcctcaactgcgaccttctcttctcgtgaacaatcgcccctcagct
cagtggatgaatcgccaaaatatgtttcctggggacagttctgggatcatgaacaatatg
ttaccacaacagcagttatctcatcaaaacggtttgatgccgcaacagcaaaggatacct
aagatgcaggttcctcagagtaggttactacatccgatgcagcctcacgggcatttgcca
ggaatgcagcctcaaccatttaactcccacctttctcgatcagcgtcctcgggcagttat
gatgcaatgcttgggtttggtgatcagagggaagcaagaccaggatcgggtcaggggaac
agacacaacatgcgctttcctcaacagggttttgatggtgggcttcagaggagaaataat
gcatggcctcctttcaggtctaaatatatgacagctgatgaaatagagaacatcttgaga
atgcagcttgtagctacacatagcaatgatccttatgtagatgattattaccaccagggg
cgtcttgctaagaaatctgctggcgccaaactgaagcaccatttctgtccgaatcattta
agagaccttccatctcgcgcacgtactaacaatgagccccatgcatatcttcaggttgat
gctcttggtagagttcctttctcttcgatccgcaggcctcggcctctgcttgaaatggat
cctccaaattcaaataaatctggtaatctggaccagaaagatacagacaagccccttgaa
caagaaccaatgcttgcagctagggtgattattgaggaaggtctctacctcttcctcgag
gtagatgatattgaccgattcttagagttcaatcaactcccagatggtggaaaccagttg
aggcaaaagcgacaagctctgttggatgggcttgcagtgtcattgcagcttgttgaccca
cttggtaaaaacgggcaaaacagtgggcttgcatctcaggatcttgtctttctaaggatc
acctcccttcgaaagggccggaagctactcacaaggtacctccagcttcttttccccggc
aatgatctaatgcgaatcgtctgcatggctatttttagacacttaaggtctttgtttgga
gtgagatcatcagatgccgaaaccacaaaaacaacaatcaaacttggaaaagttgtcgcg
ttatgcattcacaccatggatcttggacccgtaagcgcttgtctagcagcagtttcttgt
tcttccgagcacccaccacttcgccctttgggtagccctgttggagacgagtctactatt
atactgaaaactgcactcgatagagcttccgagcttctcagtgctaacaattacaacaac
gcaggcatgaatctgtggcgtgcttcctttgatgagttctttaacttactgatgaaacac
tgcataagcaagtacgacagtataatgcagaacctgaattcgcaattgttaccacacttt
gccacagagatgtctgacgctgctgcacaagctattgtcagggaaatgcctatcgagctt
ctacgtgcaagtttcccgcacattagtgatgagcaaaagagaatacttttggaattcttg
aagcctggtagccagaaaatcggataa

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