Camelina sativa (false flax): 104741220
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Entry
104741220 CDS
T05044
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104741220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104741220
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104741220
Spliceosome [BR:
csat03041
]
Complex C
Other components
Step II factors
104741220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
AAA_30
HA2_N
nSTAND3
ResIII
PhoH
AAA_16
ATPase
SLFN-g3_helicase
ABC_tran
DUF2532
T2SSE
TsaE
Motif
Other DBs
NCBI-GeneID:
104741220
NCBI-ProteinID:
XP_010460316
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All DBs
Position
14:12691853..12695885
Genome browser
AA seq
709 aa
AA seq
DB search
MPSMAQGEPRSSVQNTKPNCSMRQKITEHRKSLPIASVEKRLIEEVRKNDILIIVGETGS
GKTTQLPQFLYNAGFCREGKMIGITQPRRIAAVTVAKRVAEECEVQLGQKVGYSIRFDDT
TSNVTRLKYMTDGLLLREALLDPHLSRYSVIIVDEAHDRSVHTDVLLALLKKIQRARSKP
VGDKSEIGNMALQVQSKTRDENGPQQNGVLRGCQGRKLSPLKLIIMSASLDARVFSEYYG
GAKAVHVQGRQFPVDILYTVHPESDYIDAALVTIFQIHMEEKPGDILVFLTGQDEIESVE
RLVQERLQHLPEDKRKLLPIPIFSALPSEQQMKAFAVAPPGFRKVILATNIAETSITIPG
IRYVIDPGFVKARTYDPRKGMESLDVVPASKAQTLQRSGRAGREVPGKCFRLYPEREFEK
LEDSTKPEIKRCNLSNIILQLKALGIEDIIGFDFIDKPSSGAIVKALAELHSLGALTDDG
KLEDPAGYQMSRLPLEPIYSKALILANQFNCLEEMLITVAVLTVESIFYDPREKREEART
ARNHFASVEGDHLTYLSVYRESDEFLEKKKVAGSGNNIDKIMKKWCKENFVNSRSLKHAR
DIYRQIREHVEQMGFNVSSCGNDMLEFRRCLAASFFLKAAQRQLDGTYRALESGEIVHIH
PTSVLFRAKPECVIFDELMQTSKKYIKNLTRIDPLWLAELAPHHFKTAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaatggcgcaaggagaacctcggagctctgtacaaaacactaaaccgaactgc
agcatgaggcaaaagataacagaacatagaaagtctcttcctattgcttcagtggagaag
cgtttgattgaggaggttcgaaagaatgatattttgattattgttggtgaaaccggtagt
gggaaaactactcaattgcctcagttcttatacaatgctggattctgtcgagagggaaag
atgattgggataacacaaccaaggcgtatcgctgctgtgactgttgctaaaagggtagct
gaggaatgtgaggttcagttaggccaaaaggttggctattccattaggtttgatgatact
acttctaatgttactaggttgaaatacatgacagatggattgttgctgagggaagcgctg
ttggatcctcatctttctagatattcagttataattgttgatgaagctcatgacaggagt
gttcatactgatgttctgctggccttgctgaaaaaaatacagcgggctcggtcaaagcct
gttggtgataaaagtgagattggtaatatggcattacaagtgcagtcaaaaacaagggat
gagaatggtcctcagcagaatggtgtattaagaggttgtcaaggtagaaaattatctccg
ttgaagctgatcattatgtctgctagtttggatgcacgtgttttctctgagtattacggt
ggtgccaaagctgttcatgtgcaagggcgacaatttccggttgacattctttacactgtt
catcctgaatcagattatatagatgctgccttggtcaccatatttcagattcacatggag
gagaagccaggtgacatacttgttttcctcactgggcaagatgaaatcgaatctgttgag
agacttgtccaagaaagacttcagcatttacctgaagacaaacgaaagctactgccaatt
cctatcttttctgctcttccatcagagcagcaaatgaaagcttttgctgtagctccgcct
ggttttcgtaaggtgattttggccacaaatatagcagagacatcaattacaattcctgga
ataagatacgttatagaccctgggtttgttaaggcacgaacctatgatccaaggaaaggc
atggagtcacttgatgttgttccagcatcaaaagcacagacacttcaaagaagtggacgc
gcaggacgtgaggttcctgggaagtgctttcgtctttatccggagagggaatttgagaaa
ctggaagattcaactaaaccagagatcaagagatgcaatctctcaaatatcattttgcag
ctgaaggcactgggaattgaggatataattggatttgattttatagataaaccttcaagt
ggtgcgattgtaaaagcattggcagagttgcactcgcttggtgccttgacggatgatggt
aaactagaagatcccgctggctaccaaatgtcacggctcccactggaacctatttactcc
aaagctctaattttggccaatcaattcaactgtctagaggaaatgctgatcactgttgcc
gtgctcactgtggagtccatattttatgatccgcgtgagaagagagaagaggcaagaaca
gcaagaaaccacttcgctagcgttgaaggggatcacctaacttatcttagtgtttatcgg
gagtcagatgagttcttggaaaagaaaaaagtagccggcagtggaaacaatattgataaa
attatgaaaaaatggtgtaaggagaactttgtgaatagccgttccttgaagcatgctcgt
gacatatataggcaaattcgtgaacatgttgaacagatgggttttaatgtgtcttcatgc
ggtaatgacatgcttgagtttcgtagatgtcttgctgcatcgtttttccttaaagcagca
cagagacaattggacggtacatacagggctttggaaagtggtgagattgtccacatccac
ccaacttctgttttattccgtgcgaaacctgaatgtgttatattcgacgagctcatgcaa
accagcaagaagtacatcaagaacctcacaagaattgatcccttatggttggctgagttg
gctcctcatcatttcaaaacggcagagtga
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