Camelina sativa (false flax): 104741393
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Entry
104741393 CDS
T05044
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104741393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104741393
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104741393
Spliceosome [BR:
csat03041
]
Complex C
Other components
Step II factors
104741393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
ABC_tran
nSTAND3
AAA_16
SLFN-g3_helicase
ATPase_2
AAA_30
Helicase_RecD
AAA_29
DAP3
T2SSE
NPHP3_N
AAA_33
FtsK_SpoIIIE
NB-ARC
Sigma54_activat
PhoH
AAA_23
nSTAND1
SRP54
Motif
Other DBs
NCBI-GeneID:
104741393
NCBI-ProteinID:
XP_010460552
LinkDB
All DBs
Position
14:complement(13894371..13901226)
Genome browser
AA seq
699 aa
AA seq
DB search
MANLPILQFEEKIVEVVEKNPVVVVIGETGSGKSTQLSQILHRHGYTKSGVIAITQPRRV
AAVSVARRVAQELDVPLGEDVGYAIRFEDRTSSKTRIKYLTDGVLLRESLSNPMLDDYSV
IILDEAHERSLNTDILLGLMKRLVRIRGSNFKVLITSATLDGEKVSEFFSGCPVLNVPGK
LYPVEILYSKERPVSYIESSLKVAIDIHAREPEGDILIFMTGQDDIEKLVSKLEEKVRSL
AEGSCMDAIIYPLHGSLPPEMQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSSGMYSLDVIQISKVQANQRAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPE
IQRTSLAGSVLYLKSLDLPDIDILKFDFLDAPSSESLEDALKQLYFIDAIDANGAITSIG
RTMSELPLEPSMSRTLIEANESGCLSQALTVVAMLSAETTLLPARSKPSEKKRKHDDSNL
PDGSGYGDHIQLLQIFESWDRNNYDPVWCKENGMQMRGMVFVKDVRRQLCQIMQKISKDR
LEVGAHGRKSSRGDDYRKLRKALCVGNANQVAERMLRHNGYRTLNFSSQLVQVHPSSVLT
ADRDGMLPNYVVFHELISTTRPFMRNVCVVEMSWVAPIKRKIEKLNVRKLSGGPASSVKE
PEKKMELSKDDAETPAVIENVESRIEAARERFLARKGQK
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcttccgattcttcagtttgaagagaagatcgtggaagtagtggagaagaat
ccagtggtagttgtaatcggagaaaccggttctgggaaaagtactcagctctctcagata
cttcatcggcatggttacacaaagtccggcgtcatcgccattactcaaccccgacgtgtg
gctgccgtttctgttgccaggcgagttgcgcaggagcttgatgtacctcttggagaagat
gttggctatgctatacgtttcgaggacagaacttcgagcaaaacacggattaaatacctc
acagatggagttctacttcgtgagagtctttcaaatccaatgcttgatgattattccgta
atcatattggatgaggctcatgagagaagtttaaacacggatattcttttgggtctcatg
aaacggttggttagaatccgcgggtccaactttaaagttcttataacctctgcaacactt
gacggtgaaaaggtttctgaattcttttcgggctgccctgtgttgaatgttcctgggaaa
ttatatcccgtggaaatattatacagcaaagagcgtcctgtcagttatattgagtcatct
ctgaaagtagcaattgatatacatgctcgtgagccagaaggtgatatcttaatctttatg
actggacaggatgatatagaaaagttagtatcaaagctagaggaaaaagtacgaagcttg
gctgaaggatcctgtatggatgctatcatttatcctcttcacggttctttaccacctgaa
atgcaggttcgtgtatttagtcctcctcctccaaactgccgcagatttattgttgctaca
aatattgctgaaacttctcttactgtggatggggttgtgtatgtaatagattccgggtat
gtgaagcaaagacaatataacccatcaagcggaatgtattctcttgatgttattcaaatt
agcaaagttcaagctaaccaacgtgcaggacgtgctggcagaacaagacctgggaaatgt
tatcgtttatacccattggcagtctaccgagatgacttccttgatgcaacaattcctgaa
atacaacgaacttctcttgctgggagtgttctatacttgaaatcgttggatcttcctgat
attgacattctcaagttcgattttcttgatgctccttcatctgagtcattagaagatgca
ttgaagcaattgtatttcattgatgcaattgatgcgaatggagcaataacaagtattgga
cggacaatgtctgagcttccactagaaccatcaatgtcaagaacattgatagaagcgaat
gaaagcggttgcttatcacaagctctaacagtcgttgctatgctgtcagcagagactaca
ctacttccggctaggagtaaacccagtgaaaagaagaggaagcatgatgattctaatctt
cctgatggatccggatatggtgatcacattcaactgctacagattttcgagtcttgggac
cgtaataattatgatcctgtatggtgcaaagaaaatggcatgcagatgcgagggatggtg
tttgtcaaagatgttagaagacaattgtgtcagattatgcagaaaatatccaaagatcga
ttggaagttggggcacatggaaggaagagttcacgcggagacgactacaggaagttgagg
aaagctctatgcgttggtaatgcaaaccaagttgctgagaggatgcttcgtcacaatgga
taccggactcttaatttctcgtcccagctagtccaggtgcatccatcatctgtgttgact
gccgacagggacggaatgttgcctaactacgtagtgttccatgagctgatttccaccaca
cggccgttcatgcggaatgtttgtgtagtagaaatgtcatgggtggctcccatcaaaaga
aagatcgagaaattaaatgtcagaaaattgagcggtggaccggcttcttctgtcaaagaa
cctgagaagaagatggagttgtctaaggacgatgcagaaacacctgcagttattgagaat
gtggagagtcggattgaagcagccagagaacggtttcttgctcgtaaaggacagaaataa
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