Camelina sativa (false flax): 104742312
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Entry
104742312 CDS
T05044
Name
(RefSeq) uncharacterized protein LOC104742312
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csat04131
]
104742312
Membrane trafficking [BR:
csat04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
104742312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_VAB
Vps62
VPS13_M
VPS13_C
C2
Motif
Other DBs
NCBI-GeneID:
104742312
NCBI-ProteinID:
XP_010461607
UniProt:
A0ABM0VVA8
LinkDB
All DBs
Position
14:complement(24142441..24161224)
Genome browser
AA seq
3162 aa
AA seq
DB search
MKAADLVITGALVETKLYLYGKIKDECDEQVEEVLLLKVLASGGKVHVISSESGLTVRTK
LHSLKIKDELQQQQSGSAQYLAYSVLKNEDIQESLETWDSFDKEMPVGHADDEDAYTDAL
PEFLSPTEPGTPDMDMIQCSMMMDSDEHVGLEDAEGIVHEKDTTQGKVLCDEVFYEVQGG
EFSDFVSVVFLTRSSSSHDYNGIDTQMSIRMSKLEFFCSRPTLVALIGFGFDLSTASYIE
NAKDANNSASEKSDSEKETNDESGRIEGLLGYGKERVVFYLNMNVDNVTVFLNKEDGSQL
AMFVQERFVLDIKVHPSSLSIEGTLGNFKLCDKSLDSGNCWSWLCDIRDPGVESLIKFKF
SSYSAGDDDYEGYDYSLSGKLSAVRIVFLYRFVQEVTAYFMGLATPHTEEVIKLVDKVGG
FEWLIQKDEMDGATALKLDLSLDTPIIVVPRESLSKDYIQLDLGQLEVSNDISWHGCPEK
DPSAVRVDVLHAKILGLNMSVGINGSIGKPMIREGQGLDIFVRRSLRDVFKKVPTVSVEV
KIDFLHAVISDKEYDIIVSCTTMNLFEEPKLPPDFRGSSSGPKAKMRLLADKVNLNSQMI
MSRTVTILAVDINYALLELRNSVNEESPLAHVALEGLWVSYRMTSLSETDLYVSVPKVSV
LDIRPNTKPEMRLMLGSSVDASKQASSGSFPFSLNKGSFKRVNSRADLDFDAPCSTMLLM
DYRWRASSQSCVLRVQQPRILAVPDFLLAVGEFFVPALRAITGRDETLDPTNDPITRSRG
IILSEPLYKQTEDVVYLSPCRQLVADSLGIDEYTYDGCGKVISLSEQGEKNLNIGRLEPI
IIVGHGKKLRFINVKIKNGPLLSKCIYLSNDSSCLFSPEDGVDISMLENASSNPENVLSH
VHKSSDVSDACQYDSKSGQSYTFEAQVVSPEFTFFDGTKSSLDDSTAVEKLLRVKLDFNF
MYASKENDIWVRALLKNLVVETGSGLIILDPVDISGGYTSVKEKTNMSLTSTDIYMHLSL
SALSLLLNLQSQVTGALQSGNAIPLASCTNFHRIWVSPKENGPRNNLTIWRPQAPSNYVI
LGDCVTSRAIPPTQAVMAVSNTYGRVRKPIGFNCIGLFSVIQGLEGANVPHSRDSNECSL
WMPVAPAGYTAMGCVANLGSEPPADHIVYCLRSDLVSSSSFSECIYTVPSSSLFESGFSM
WRADNVLGSFYAHTSTAEPSRKYSPGLSHCLLWNPLQSKTSPLSDQPSTSGSQSEQTSDP
TGSSSGWDILRSISKATSYHVSTPNFERIWWDKGGDLRRPVSIWRPVPRPGFAILGDSIT
EGLEPPALGILFKADDSEIAAKPVQFTKVAHIVGKGFDEVFCWFPVAPPGYVSLGCVLSK
FDEAPRVDSFCCPRIDLVNQANIYEASVTRSSSSKSSQCWSIWKVDNQACTFLARADLKR
PPSRLAFAVGESVKPKTQDNVNAEIKLRCFSMTLLDGLHGMMTPLFDTTVTNIKLATHGR
PEAMNAVLISSIAASTFNPQLEAWEPLIEPFDGIFKLETYDTALNQSSKPGKRLRIAATN
ILNINVSAANLETLGDAVVSWRRQLELEERAAKMKEESAVSRESGVLSAFSALDEDDFQT
IVVENKLGRDIYLKKLEENSDVVVKLCHDENTSVWVPPPRFSNRLNVADSSREARNYMTV
QILEAKGLHIIDDGNSHNFFCTLRLVVDSQGAEPQKLFPQSARTKCVKPSTTIVNDLMEC
TSKWNELFIFEIPRKGLARLEVEVTNLAAKAGKGEVVGSLSFPVGHGESTLRKIASVRML
HHSSDAENISSYTLQRKNAEDKHDNGCLLISTSYFEKTTIPNTLRNIESKDFVDGDTGFW
IGVRPDDSWHSVRSLLPLGIAPKSLQNDFIAMEVSMRNGRKHATFRCLATVVNDSDVNLE
ISISSDQNVSSGASNHNALIAARSSYVLPWGCLSKDNEQCLHVRPTAENPHHSYAWGSCI
AVSSGCGKDQPFVDQGLLTRQNTVKQSSRASAFSLKLNQLEKKDMLFCCQPSTGSKPLWL
SVGADASVLHTDLNTPVYDWKISICSPLKLENRLPCPVKFTVWEKTKEGTYLERQHGVVS
SRKSAHVYSADIQRPVYLTLAVHGGWALEKDPIPVLDLSSSDSVSSFWFVHQQSKRRLRV
SIERDVGETGAAPKTIRFFVPYWITNDSYLPLGYRVVEIEPSENVEAGSPCLSRASKSFK
KNPVFSMERRQQKKNVRVLEVIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSYVSPRVGI
AIAARDSDIYSPGISLLELEKKERIDVKAFCKDASYYMLSAVLNMTSDRTKVIHLQPHTL
FINRVGMSICIQQCDCQTEEWINPSDPPKLFGWQSSTRLELLKLRVKGYRWSTPFSVFSE
GIMRVPVSREDGTDQLQLRVQVRSGTKNSRYEVIFRPNSLSGPYRIENRSMFLPIRYRQV
DGVNESWQFVPPNAAASFYWEDLGRRHLFELLVDGNDPSKSEKYDIDKIGDHPPRSENGP
TRPIRVTILKEDKRNIVRISDWMPAIEPTSSISRRLPASSLSELSGNESQQSHLLASEDS
EFHVIVELAELGISVVDHAPEEILYMSVQNLFVAYSTGLGSGLSRFKLRMQGIQVDNQLP
LAPMPVLFRPQRTGDKADYILKFSVTSQSNAGLDLCAYPYIGFQGRENTAFLVNIHEPII
WRIHEMIQQANLSRLSDSKSTAVSVDPFIQIGVLNISEVKFKVSMAMSPSQRPRGVLGFW
SSLMTALGNTENMPVRISERFNENISMRQSTMINNAIRNVKKDLLGQPLQLLSGVDILGN
ASSALGHMSQGIAALSMDKKFIQSRQRQENKGVEDFGDIIREGGGALAKGLFRGVTGILT
KPLEGAKSSGVEGFVSGFGKGIIGAAAQPVSGVLDLLSKTTEGANAMRMKIAAAITSDEQ
LLRRRLPRAVGADSLLRPYNEYRAQGQVILQLAESGSFLGQVDLFKVRGKFALTDAYESH
FILPKGKVLMITHRRVILLQQPSNIMGQRKFIPAKDACSIQWDILWNDLGTMELTDGKKD
QPNSPPSRLILYLKAKPYDSKEQVRVVKCSPNTKQAFEVYSAIDQAINLYGEDALKGMVK
NKVTRPYSPMSESSWAEGASQQMPASVTPSSTFGTSPSSSSS
NT seq
9489 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctgctgatctagttattactggtgctttggttgagacgaagttgtacttgtat
ggaaagataaaagatgaatgtgatgagcaggttgaagaggttctgcttcttaaggttctt
gcttccggaggaaaggtgcacgtgataagttccgagagtggtttaactgttaggacaaag
ttgcactctctgaaaatcaaagatgaacttcagcagcagcagtcaggaagtgctcagtat
ttggcgtactctgttctgaagaacgaagacattcaagaatcattagaaacatgggattct
tttgacaaggagatgcctgtaggacatgcagatgatgaagatgcctacactgatgctttg
ccagagtttctgtctcctacagaaccaggtactccggatatggatatgattcaatgcagc
atgatgatggactccgatgaacatgtgggacttgaggatgctgaaggaatagttcatgaa
aaagatacaactcagggaaaagttctttgcgatgaggtcttctatgaggtgcagggtggg
gaattttctgattttgtatcagttgttttcttgacgaggagctccagttcccacgattat
aatggaatcgacacacagatgagcattcgcatgtcaaaactggagttcttttgtagcaga
ccaactttagttgctctaattggttttggatttgacttgagcacggcatcatacattgaa
aatgctaaagacgccaacaattcggcatctgagaaatctgatagtgagaaagaaacaaat
gatgaaagtggacgcattgaaggcttacttggatatggcaaggaacgtgttgtgttttac
ctgaacatgaatgttgataatgtgactgtgtttcttaacaaggaggatggttctcagctt
gcgatgtttgtgcaggaacgatttgtgttggacattaaggttcacccgagctctctttca
atagaagggactctgggaaatttcaaactctgtgacaagtcgttggactctggaaactgt
tggagttggctctgtgacatacgtgatcctggtgttgagtctctcatcaagttcaaattc
agttcctacagtgctggagatgacgactatgaaggatatgattatagcttatctggtaaa
ctgtcggctgttcgtattgtattcctctacagatttgttcaagaggtcacagcgtacttc
atgggacttgccactcctcatactgaagaagtcattaaacttgttgacaaagttggagga
tttgagtggctcatccagaaagatgaaatggatggtgctactgcgctgaaactggacctt
tcattagacactccaataattgttgtccctagagaatctcttagcaaagattacattcaa
cttgaccttggtcagctggaggtatcaaatgatataagttggcatgggtgtccggagaaa
gacccaagtgctgtacgtgtagatgttcttcatgcgaagattcttggactaaatatgtca
gtaggcataaatggttcaattggtaaaccaatgatacgtgaaggccagggactggacatc
tttgtccggcgcagcctaagagatgtttttaaaaaagtcccaacagtttcagttgaggtt
aagattgatttcttgcatgctgtgatatctgacaaagaatatgatattattgtaagttgc
acaaccatgaatttgtttgaggagccaaagctacctccagatttccgtggcagcagttct
ggtcccaaagctaaaatgcgtctactggctgacaaagttaacttgaatagtcagatgata
atgtcacgtacagttaccatactggctgttgatatcaattatgctcttctcgagttacgt
aatagtgttaatgaagagtcaccattagctcatgttgcgcttgaaggattatgggtatcc
tacaggatgacgtcactatctgagacagacttgtatgtgtcagttcctaaagtttctgtt
cttgatatccgtcctaacacgaagcctgaaatgcgattgatgctcggctcatcagtcgat
gcttccaagcaagcttcctctggatcttttcccttttctctgaataagggaagctttaag
cgagtcaactctagggctgatcttgattttgacgcaccatgttcaacaatgttgctgatg
gattatagatggcgagcatcctctcagtcatgtgttttgcgggttcaacaacctcgtatc
ctagctgttcctgacttccttcttgcggttggtgaattttttgttccagctttgcgtgca
ataacaggaagagacgaaacattagatccaacaaatgatccaatcacccgaagtcgtggc
ataattctctctgagcctctctataaacaaacggaagatgttgtgtacttgtctccttgt
agacagttagtagcagactcattaggcattgatgagtatacttatgacggatgcggaaag
gtaatatctttgagtgagcaaggagagaagaatttaaacataggaagattagaacccatc
ataatcgttggacatggaaagaagttgcggttcatcaatgtgaaaattaagaatggaccg
cttctgagcaagtgcatttacttgagtaacgatagtagctgtttattttctccggaagat
ggtgttgacatctcaatgttagaaaacgcctcatcaaatcctgagaatgtgcttagccat
gtgcacaaatcatcagatgtttcagacgcttgtcaatatgattcgaagtctggtcagagt
tatacctttgaagctcaggttgtttctcctgagttcaccttctttgatggtacaaaatca
tctctggatgactccactgctgtagaaaagcttttgcgagttaaattggattttaatttt
atgtatgcctcaaaagaaaatgacatctgggttcgagctttgctgaagaacctggtggtt
gaaactggttctggtcttatcattcttgatccagttgatatctccgggggatacacttct
gtcaaagagaaaacaaatatgtccttaacctccactgacatatacatgcacctttctttg
agtgctctttctctcctactgaacctgcagagccaagtaactggggctttacaatctgga
aatgctattcctttagcttcatgcaccaacttccacaggatttgggtttcaccgaaagaa
aatggaccgaggaacaacctcacaatttggagaccgcaggctccttcaaactatgtcata
ttgggagactgtgtgacgtcaagggcaattcctcctacacaagctgtaatggcagtaagt
aatacatacgggcgtgtgaggaagccaattgggtttaattgtattggcctgttctctgtt
attcaaggtttagaaggggctaatgttccacattcccgtgatagcaatgagtgttccctc
tggatgcctgtagctcctgcaggatacactgctatgggttgtgttgcaaatttaggaagt
gagccaccagctgatcacattgtttattgtctgaggtctgaccttgtatcttccagcagt
ttctctgagtgcatatacactgtgccctccagttcattatttgagtctggattcagcatg
tggcgtgctgataatgttcttggatcattctatgctcacacttcaactgcagaaccttct
agaaaatatagccctggcctcagtcattgtcttctttggaatccccttcagtcgaagaca
tctccattatctgaccaaccatcgacaagtggatctcagagcgagcaaacaagcgatccg
actggaagttcatcaggatgggacattctcaggtcaatttctaaggcaactagttatcat
gtttcaacgcctaactttgagagaatctggtgggacaagggtggtgatcttcgtagacct
gtctcaatatggaggcctgtaccacgtcctggatttgcaatattgggtgatagcataact
gaaggattggagccacctgcacttggtatactcttcaaagcagatgactctgagattgct
gccaaacctgtgcagttcactaaagtcgcacatattgtggggaaaggttttgatgaagtt
ttttgctggtttcctgttgcacctcctggttatgtttctctaggatgtgttctctctaaa
tttgatgaggcaccacgtgtggattcgttttgttgtccacggattgatcttgttaaccag
gccaacatatatgaagcctctgtcacgagatcttcaagttcaaagtcttctcaatgctgg
agcatttggaaagttgacaatcaggcatgcacttttcttgcgcgtgctgatcttaaaagg
cctccaagtcggttggctttcgctgttggagaatcggtgaagccgaagacacaggataat
gtaaatgcagaaattaagctgagatgcttctccatgacacttctagatggtttacatgga
atgatgactcctctctttgacacaactgtcaccaatatcaaactagcaactcatggtcgt
cctgaggccatgaatgcagtactcatttcatcaatcgctgcttcaacatttaacccgcag
ttggaagcatgggagccgcttatagagccatttgatggaatattcaagttggaaacatat
gatactgctttgaaccaatcatcaaagccaggaaaacgactgcgaattgctgctactaac
attttgaacataaatgttagtgctgcaaaccttgaaactcttggcgatgctgttgtgtcc
tggagaaggcaattagaacttgaagaaagagcggccaaaatgaaagaagaatccgccgtc
tctcgtgagagtggggttctttcagctttttcagctcttgacgaagatgattttcagacc
attgtggtagagaataaactcggccgtgacatatatctgaaaaagttggaggagaactca
gatgtagttgtaaaattgtgtcacgacgaaaacacttctgtctgggttccaccgccaagg
ttctccaataggttaaatgttgcagacagttctagagaagcacgcaattacatgactgta
cagattcttgaggctaagggtttacatatcattgatgatggtaatagtcacaatttcttt
tgcaccctacgcctcgttgttgatagtcagggtgcagaaccacaaaaactttttcctcaa
agtgctaggacaaagtgcgtgaagccttcaactacaattgtcaacgacttgatggagtgc
acttccaagtggaatgaactttttatttttgaaattcctaggaagggattggccaggttg
gaggttgaggtgacaaaccttgctgcgaaagctggaaaaggggaggtcgtcgggtcgctt
tcgtttcctgttggacatggggagagtacgcttagaaagatagcttcagtaaggatgcta
catcattcaagtgatgcagagaatataagttcctatacgcttcagagaaagaatgctgaa
gataaacatgacaatgggtgcttgcttatctcaacatcttactttgagaagactacaata
cccaacacactaagaaatatagaaagtaaggattttgttgacggagacactggtttctgg
attggagttcgccctgatgactcatggcatagcgttcgctcgctgcttccgcttggtatt
gctccgaaatccctacaaaatgattttattgcaatggaggtttctatgagaaatggaaga
aagcacgcaacattcagatgtttagctacagttgtaaatgattcagatgtcaatttagag
atatccatatcttctgatcagaatgtctcttcgggagcaagcaatcataatgcattgatt
gctgcaagatcttcatatgttttaccatggggatgtttatcaaaggataatgaacagtgc
ctgcatgtccgaccaacggctgagaaccctcatcattcttatgcatggggttcgtgcatc
gcggtgagttctggttgtggaaaagatcaaccatttgttgatcaagggttgcttactcgg
cagaatactgtcaagcaaagcagcagggcatctgcattttctttgaaattaaaccaactt
gagaagaaggatatgcttttctgctgccagccttctactgggagtaaaccattatggctc
agtgtaggagcagatgcgtcagttcttcatacagacctcaatacacctgtatatgattgg
aaaatttctatatgttctcctttgaagctagaaaatagacttccttgtccagtcaaattc
acagtgtgggaaaagacaaaagaaggcacctatcttgagagacaacatggtgtagtatca
tcaaggaagagtgctcacgtatattcggcagatattcagagacctgtgtatcttacgtta
gctgtccatggtggttgggctttggaaaaggatcctattcctgttttagatctatcttca
agtgacagcgtgtcatccttttggttcgtccatcaacagagcaaaaggagattgcgtgta
agtatcgaacgtgatgtgggagaaacaggggctgcaccaaagactataaggttctttgtc
ccatactggattacaaatgattcgtatcttcctctaggctatagagtagtggagattgaa
ccttcagaaaatgtggaagctggctctccctgtctgtctagggcttccaaatcttttaag
aaaaatccagttttttcgatggagaggagacaacagaagaaaaatgtccgagtgcttgag
gttattgaggatactagtccaatgcctagcatgctttctccgcaagaatctgctggccgg
agtggcgttgtgctgtttccgtctcagaaggattcttatgtttccccgcgagttggtatt
gctattgcagctcgggattctgatatttacagtcctggaatttctcttcttgagcttgag
aagaaggaacgcatagatgtaaaggcattctgcaaagacgcctcatactacatgctctca
gcagtattaaatatgacatctgacagaacaaaggttattcatctccaaccacacacctta
ttcatcaacagggtgggcatgagcatctgtattcagcagtgcgattgtcagacagaagaa
tggattaatccttctgatcctccgaaactctttggatggcagtcttccacccggcttgag
ttgctgaaattacgagtgaagggatatagatggagcacgccattcagtgtctttagcgaa
ggtataatgcgtgtccctgtttcaagagaagatgggactgatcaattgcagctaagagta
caagtcagaagcgggacaaagaactcacgttatgaagttattttcagaccgaactctctc
tctggcccttacaggatcgagaaccgttccatgtttcttcctattcgctatcgccaagtg
gatggtgtcaacgagtcttggcaatttgttcctcctaacgcggctgcttcgttttattgg
gaagatcttggtagacgacatctatttgaactccttgttgatggaaacgatccttctaaa
tcagaaaaatacgatattgataagataggtgatcatccaccacgaagtgaaaatggacct
accagacccatacgagttactattttaaaggaggacaaaaggaatattgtcaggatcagt
gactggatgccagcaattgagcctacttcaagcataagcagaagacttccagcatcatct
ctgtcagaattatctggaaatgagtctcagcagtctcatcttttagcttcggaagattct
gagtttcatgtgattgttgagcttgctgaacttggaatctctgtagtcgatcatgctcct
gaggaaatactgtacatgtcagtgcaaaatctctttgtggcatattcaaccggcttgggc
tctggacttagcaggttcaaactaaggatgcaaggaatacaagttgataaccaattgcca
ttggctccaatgccagttctgttcagaccacagagaactggagacaaagctgattacatt
ctgaagttttctgttacttcgcaatcaaatgctggtctcgatctctgtgcctacccgtat
ataggtttccaaggacgtgaaaatactgcctttctggtaaacattcatgaacctattatc
tggcgcattcatgagatgatccagcaagccaacttgagtagactatccgattcaaagtcg
acggctgtatcagttgatccattcattcaaatcggagttcttaacatctccgaagttaaa
tttaaagtatccatggccatgtcccccagtcaaaggccaaggggagtgcttggattttgg
tcatccctgatgactgctcttgggaatacagaaaacatgccagtacgcataagtgagaga
tttaatgagaacatatccatgcgccaaagtactatgatcaataatgctattaggaacgta
aagaaagatctccttggccagcctcttcagttgctttcaggtgttgatattcttggcaat
gcaagcagcgcacttggacatatgagtcaggggatagctgcattatcaatggataaaaaa
ttcatacaaagtcgacagagacaggagaacaaaggcgttgaggactttggcgatattatc
agagaaggaggtggagctcttgcgaagggcctgtttagaggagtcacaggcatattgacg
aagcctcttgaaggtgcaaagtcttcaggtgtcgaaggctttgtctctggttttgggaaa
ggaatcattggtgctgctgcccaacctgtgagcggagttctggatcttctgtcaaagacc
accgaaggtgcaaatgccatgaggatgaagatagcagctgccataacttcagatgaacaa
ctgcttcgtcggagacttccaagagctgttggtgctgatagcttacttcgtccttacaat
gaatacagagcacagggacaggtcatattgcagttggcagaatctggatcattcctgggg
caggttgatctgtttaaagtacgtgggaagtttgcactaacagatgcctatgaaagtcat
ttcattctaccaaaaggaaaagttctgatgatcacacatagaagagtgatattgctacaa
caaccctccaacataatgggccaaaggaaatttatcccggccaaagatgcgtgttctata
cagtgggacattctatggaatgatctgggaaccatggagctgactgacgggaaaaaagac
caacctaactctccaccctcgcggcttattctttatctgaaagcaaagccatatgattcg
aaggaacaagtccgtgttgtaaagtgcagccccaacaccaagcaggcctttgaggtttac
tcagccatcgatcaagccattaacttgtacggggaggatgctttaaagggaatggtgaaa
aacaaagttacaaggccatattccccaatgtctgagagttcttgggctgaaggggcatct
caacaaatgccagcttcagttacaccatcttcaacttttggcacaagcccttcttcaagc
tcaagttaa
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integrated database retrieval system
