KEGG   Camelina sativa (false flax): 104742317
Entry
104742317         CDS       T05044                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
csat  Camelina sativa (false flax)
Pathway
csat03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104742317
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csat03041]
    104742317
   03036 Chromosome and associated proteins [BR:csat03036]
    104742317
Spliceosome [BR:csat03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    104742317
 Complex B
    104742317
 Complex C
   U2 SnRNP specific factors
    104742317
Chromosome and associated proteins [BR:csat03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    104742317
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 HEAT_2 Htt_N-HEAT_1 XMAP215_CLASP_TOG Vac14_Fab1_bd ParcG Adaptin_N
Other DBs
NCBI-GeneID: 104742317
NCBI-ProteinID: XP_019094107
LinkDB
Position
2:27363527..27368262
AA seq 1262 aa
MADLDPEIAKTQEERRNMEASLTSLTFDRDLYAGEDRATYLSSIAPNDEEDPNLDATGSL
VAQRLASYTAPRAILDDVARPHDEDDDVGFRPRQSISEREDDYRRRRLNRVLSPDRVDAF
AMGENTPDPSVRTYADHMQETSLQREKEETMRLIGKKKKEQEEAAKHKKDSAPPPPPPPS
SKRRNRWDRPEEEGSASKKAKAESSDWDVTDAAPGIGRWDAPTPGRVSDATPSAGRRNRW
DETPTPGRVTDSDGGVTPGATPSGVTWDGTPKGLATPTPKRQRSRWDETPATMGSATPMG
GVTPGGAYTPGVTPIGGADMATPTPSQLIFGGAMTPEMHNMKRWEKDIEERNRPLSDEEL
DAMFPKDGYKVLDPPASYVPIRTPARKLQATPTPMATPGYVIPEENRGQQFDVPQEVPGG
LPFMKPEDYQYFGSLLNEENEEELTPEEQKERKIMKLLLKVKNGTPAQRKTALRQLTDKA
RELGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRILYKLDEMVRPYVHKILVVIEPLLI
DEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPA
LLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLSDENQKVRT
ITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAIYAS
YYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEPDYIRSDILPEFFRQFWVRKM
ALERRNYKQLVETTVEIANKVGVADIVGRVVEDLKDESEPYRRMVMETIDKVVTNLGASD
IDSRLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICGTIKWRLNN
KSAKVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVN
VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFEL
LEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAET
CSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL
VHRQTAASAVKHMALGVAGLGCEDALVHLLNFIWPNIFETSPHVINAVMEAIEGMRVALG
AAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYPVLEDEQNNVFSRPELTM
FV
NT seq 3789 nt   +upstreamnt  +downstreamnt
atggcggatctagatccagagatcgctaaaacccaagaggagagacggaacatggaagca
tctctcacttctttgactttcgatcgcgatctatacgcaggtgaggaccgtgcaacctac
ttgtcttctatcgcgcctaacgatgaagaggatccgaatctggacgccactggttctctt
gtggctcagcgtctcgcgtcttacactgctcctagggctattctcgacgacgtggctcgt
cctcacgacgaagatgacgatgtgggatttagacctaggcagagtatttcggaacgtgag
gatgattataggagaaggagacttaatcgggttctttctcctgatagagttgatgcgttt
gctatgggcgagaatacgccggatccgagtgttcgaacctacgcggaccatatgcaggag
acttctttgcagagggagaaagaggaaactatgaggcttattggtaagaaaaagaaagag
caagaagaagctgcaaagcataagaaggattctgctcctcctcctcctcctcctccttct
tccaagaggagaaacaggtgggatcgccctgaagaagaaggttctgcttcaaagaaagct
aaagcagaaagttcagattgggatgtgactgatgcagctccagggattggacgatgggat
gctccaactccagggagagtttctgatgccacaccatctgctggacgaaggaacaggtgg
gacgaaactcctacacctggtcgtgtgactgattctgatggtggtgttactcccggcgca
actccttcaggtgttacttgggacggtactccaaaagggcttgccacacctacccctaaa
cgccaacgttcaaggtgggacgaaactccagccactatggggagtgctacacctatgggt
ggtgtcactcctggtggagcttacactcctggtgttaccccaatcggtggggctgatatg
gctactcccactccgagtcagctaattttcggtggtgctatgacccccgagatgcacaat
atgaaaaggtgggagaaggatatcgaggagagaaacagaccattgtctgatgaagagctt
gatgccatgtttcctaaagatgggtataaggttttggatccgcctgcttcatatgttccc
atcagaacccctgcgaggaaacttcaggcaaccccgacacccatggcaactccaggctat
gttattcccgaggaaaaccgcgggcaacagtttgatgtgccccaagaggttcctggtggt
ttgccgtttatgaaaccagaggattatcagtattttggttctctgttgaatgaagagaac
gaagaagagctgactcctgaagagcagaaagaacgcaagataatgaaactgttgttaaag
gttaaaaacggaactcctgcccagaggaaaacagcgttgaggcagcttactgataaggct
cgtgagcttggtgctggtcctttgtttaataaaattttgccattgctcatgcaacccact
ttggaagatcaagagaggcatcttttggtcaaagtgattgataggattctgtacaaactg
gatgagatggtaaggccttacgtccacaaaatccttgttgttattgagcctttgctgatt
gatgaagattattatgctcgggtagaagggagggagattatttctaaccttagcaaagca
gctggtttagccactatgattgcagctatgcgtcctgatattgacaacatcgatgaatat
gtgagaaacaccacagcgagagctttcagtgtggtggcttcagctcttggaatcccagca
ctcttgcctttcctgaaagccgtgtgccagagtaaaaagtcatggcaggcacggcacact
ggaattaagattgttcagcagattgcaatactaattggctgtgccgtcctgcctcactta
aggtcgttagtagagattatcgaacatggtctcagcgatgaaaaccagaaggttaggact
attaccgctttgtcactggctgcgcttgctgaagctgctgctccatatggtattgaaagc
tttgattctgttctgaagcctttgtggaaaggtattaggtcacaccgtggtaaagtttta
gctgctttcttgaaggcgattggttttatcatccccttgatggatgctatatatgcgagc
tactatacaaaagaggtgatggttatattgattcgtgagttccagtcgccggatgaagag
atgaagaagattgtcctcaaggtggtgaaacagtgtgtaagtacagagggtgttgaaccg
gattatattcgcagtgatattctgccagagtttttcaggcaattctgggttaggaaaatg
gctctggaaaggagaaactacaagcagcttgttgaaactaccgtcgagattgccaacaag
gttggtgttgcagatattgtgggaagagttgttgaagatctcaaggacgagagtgaacca
tatcgacgtatggttatggaaaccattgacaaggttgtcacaaacttaggagcatctgat
attgattcgagattggaggaactgcttatagatggcattctttatgctttccaagaacag
actagtgacgatgctaatgtgatgcttaatggatttggtgctgtagtgaatgctcttggt
cagcgagtaaagccttatcttccccagatatgtggtaccatcaagtggcgattaaacaac
aagagtgcaaaggtcagacaacaagctgctgatctgatttctagaattgctgttgttatg
aagcaatgtggagaggaacagttgatgggacatcttggtgttgtcttgtatgaatatctt
ggagaagagtacccagaagtcttgggatcaattcttggagctttgaaagctatagtcaat
gtgattggtatgacaaagatgactcctcctattaaggatctgcttccgagactgaccccg
attttgaagaacagacacgagaaagtgcaagagaattgtattgacctggttggtaggatt
gcagatcgtggtgctgagtttgttccagccagagaatggatgagaatctgttttgagctt
cttgaaatgctcaaggctcataagaaaggtattcgtcgtgccacggtcaacactttcggg
tacatcgccaaagccattggaccacaggacgttcttgccacgttactgaacaacctcaaa
gtccaagaacgtcagaaccgtgtttgcaccacagtcgccatcgccattgtcgctgaaaca
tgctctcccttcaccgtcttacctgctttgatgaatgagtaccgtgttccagagctaaac
gtccaaaatggtgttctgaaatctctttccttcctcttcgagtacattggagaaatgggc
aaagattacatatacgcagtcacaccgttgctagaggatgcgctcatggacagagacttg
gttcacagacaaaccgccgcttcagccgtgaaacatatggcattaggtgtagctggtttg
ggatgtgaagacgctttggttcacttgcttaacttcatttggcccaacatatttgagaca
tctccccacgtcattaacgcggtgatggaagccattgaaggaatgcgagttgcattaggt
gcagctgtaattctgaactattgtttgcagggtttgtttcatccagcacgtaaagtccgc
gaagtgtactggaagatttacaactctctatacattggtgctcaggacacgcttgttgct
gcttacccggtgcttgaagatgagcagaacaatgttttcagccgaccagagctaactatg
tttgtgtga

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