Camelina sativa (false flax): 104742958
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Entry
104742958 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104742958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104742958
03009 Ribosome biogenesis [BR:
csat03009
]
104742958
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104742958
Spliceosome [BR:
csat03041
]
Complex A
U1 snRNP components
U1 related factors
104742958
Complex B
104742958
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
Pre-60S particles
Helicases
104742958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
104742958
NCBI-ProteinID:
XP_010462358
UniProt:
A0ABM0VX52
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All DBs
Position
14:30559693..30562634
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AA seq
502 aa
AA seq
DB search
MSRYDSRTGDSTSYRDRRSDSGFGGASSYGSSGSHTSSMKKDSDGNDSPRKLDFDGLTPF
EKNFYVESQAVAAMTEAEVEEYRKLREITVEGRDIPKPVKSFRDVGFPDYVLEEIKKAGF
TEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPILAPGDGPIVLVLA
PTRELAVQIQQEASKFGSSSKIKTSCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMES
NNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFL
YNPYKVIIGSSDLKANRAIRQIVDVITESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQ
ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINY
DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELMNILEEAGQKVSPELASMGR
STAPAPPGLGGFRDRGSRRGWS
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctacgatagccgtaccggcgattccacctcttaccgtgaccgtcgaagtgac
tcagggtttggtggggcttcatcgtatggaagctcaggtagtcacacatcaagcatgaaa
aaggatagtgatggcaatgactctccaaggaagctagattttgatggtttgactcctttc
gagaagaatttctatgtcgaatcgcaggctgtggcggctatgactgaggcggaagttgaa
gagtatcgtaagctgagggaaattactgttgaaggccgagatattcccaaacctgtcaag
agttttcgtgatgttggctttcctgattatgttttggaagagattaagaaggctggtttc
actgaacctacgcctatacaatctcagggttggccaatggcaatgaagggacgtgatctt
attggcattgctgaaactggctctggaaagactctttcctatttactacctgcaattgtc
catgtcaatgcccaaccaattttagctcctggggatggcccaatcgtcttggttcttgct
ccaacacgtgaactggctgtgcagattcagcaagaggcatctaaatttggttcatcctct
aaaattaagactagttgtatttatggtggagttccaaaagggcctcaagtgcgtgatctc
cagaaaggtgtggaaatcgttatagctactcccgggaggttaatagacatgatggaatcg
aacaacacaaacctgagaagggttacttatcttgttttggatgaggctgatcgaatgctg
gatatggggtttgaccctcagattcggaaaattgtttcacatattcggccggaccgtcaa
actttgtactggagtgctacttggcctaaggaggtggaacaactatccaagaagtttctt
tataacccatacaaagtgataataggatcttctgatttaaaagctaaccgtgcaatccgt
caaattgttgatgtcattacagaaagccaaaagtataacaaattggtgaagttgcttgaa
gacataatggatggaagcagaattctcgtcttcctcgacacaaaaaagggctgtgaccaa
atcactcgtcagcttcgcatggatggttggcctgctttgtcaatacatggtgataaaagc
caagctgagagagattgggttctctcggagtttaaatcaggcaaaagccctataatgact
gctacagatgtggcagctcgcggattagacgtgaaagatgtgaagtatgtgataaactat
gacttccctggatcactggaggattatgttcacaggattggaagaacgggtagagcaggg
gctaaaggaacagcatacactttcttcacagttgcaaatgcgagattcgccaaggaactt
atgaacatactagaagaagctggacagaaagtgagccctgaattggcttcaatgggtcgc
agcaccgctcctgctcctccagggcttgggggattcagagaccgtgggagcagaagaggg
tggagctga
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