Camelina sativa (false flax): 104743027
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Entry
104743027 CDS
T05044
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104743027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104743027
Enzymes [BR:
csat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104743027
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104743027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
104743027
NCBI-ProteinID:
XP_010462450
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All DBs
Position
14:31169855..31180357
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AA seq
690 aa
AA seq
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MRRQKQWPLRPLLAYSFCSSAAERVSNSTAAAATVAFPLKHVTRSNFEKTLNDLRALVKA
ADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDARTQSF
VSHPQNFFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNTCIHEGISYLSRRQEEEA
SKRLETLYREEGIDSSGETEDLKLVRLADVLFAERMKNMLNEWRTGLLNGGNVSSESPRI
SNESTRSTETVFHQMRPALSLKGFTSHQLRVINSVLGKHFGDLVYIHSNDKSSCSQDFVV
YTESESDKENLMKEAKDERKRVGERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVY
SKFVGPLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQI
EFSSRSSDSHLQQRVKIDVEVDNFRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFT
QHSQSDNLAHNEKLEKYINRLYLSWTRGDIIDLRTGHSNADNWRVSKFKYENIVLIWNFP
RKLKAREIKECICKAFGSVSVISVYHIDDSAVFLLFKNSELVWDFLKLKRQLESSDGPVS
VLHPLSKILEGGNTGAADYEAYKEICSSHISEILFSDQAETVGVKSRTRPDPQDETDRRE
ESTVAVTHKSSDLIDAFLANRVEVETATTN
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgcgccggcaaaagcaatggcctttgaggcctcttcttgcctacagcttctgctcttcg
gcggcggagagagttagtaattcaacggctgcggcggcgacggtggcttttccgttgaag
catgtgacgaggtcgaacttcgagaagacgctgaatgatctgcgtgcactcgtgaaggct
gctgatttcgtggcgattgacctagagatgactggcgtgacgagcgctccgtggcgagac
tccttagagttcgaccgctacgacgtcagatacctcaaagtcaaagactccgccgagaaa
ttcgccgtcgttcagttcggcgtatgtccctttcgttgggatgctcgaactcagtcattc
gtttcccacccgcaaaatttctttgtatttcctcggcaagagctcacatttgatccacca
gctcatgagtttctctgccagacgacttccatggattttctcgccaagtatcaatttgat
ttcaacacttgcatacatgaaggaatatcttatttgtccagacgacaagaggaagaggca
agtaagcgtttggaaacgctatacagagaggaggggattgattcatcgggtgaaacagaa
gatttgaagttggtgcgattggcggatgttctattcgctgaaaggatgaagaacatgttg
aatgaatggcggactggccttttaaacggtggtaatgtatcctctgagtctccaaggatc
tcgaatgaatcaactcggagtactgaaaccgtgtttcaccagatgcgtccagctctcagc
ctcaagggtttcacttctcatcagctcagagttattaactcggttttaggaaagcatttt
ggagatcttgtctacatacattcaaatgataaaagttcatgttcacaagactttgtagtg
tacactgaatcagaatcggacaaggaaaatctcatgaaggaggcaaaggatgagcgcaag
agagtgggggaaagaaaaatacaatctgcaatcggtttccgtcaagtgattgatctactt
gcttcagagaagaagttgattgttggtcataattgtttcctcgatattgcacatgtatac
agcaaatttgttggtcctcttccttcaacagctgagaaattcgtcgcctccatcaacagt
cactttccttacattgttgacaccaaaatactcttaaatgtgaacccaatgttgcatcag
cggatgaagaagtccagtacatcactatcctccgcgttttcttcgttgtgtccgcaaatc
gagttttcttcaagatcctcggactcgcatcttcagcagcgtgtcaagattgatgttgaa
gtagacaactttaggtgttctaactggaatgcaggaggaaaacatgaagccggttatgat
gctttcatgacaggttgcatctttgcgcaggcatgcaatcatctagggttcgacttcaca
cagcattcgcaatcagataacttggcccataatgagaaacttgagaagtacatcaaccgt
ctttatctcagctggactagaggtgatatcatcgaccttcgaacaggccacagtaatgca
gataactggcgagtctcaaagtttaaatacgagaacattgtcctcatctggaacttccca
cgaaaactgaaggctagagagatcaaagaatgcatctgcaaagcctttggctcggtttcc
gttatctctgtctaccacattgatgactctgcggtttttctcttgttcaagaattcagaa
cttgtctgggacttcctaaagcttaagcggcagctggagtcaagcgacggtccagtttcg
gttcttcacccattatccaagatcctcgaaggaggaaacactggagctgcagactacgaa
gcatacaaagagatttgcagctcacacatctcagagatcctattctctgaccaagctgaa
acagttggtgtgaaatcaagaacaagacccgacccacaagatgagacagatagaagagaa
gagagcacagtcgctgtgactcacaaatcttcggatttgattgatgcttttttggccaat
agagttgaagtcgaaactgctacgactaattaa
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