Camelina sativa (false flax): 104743561
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Entry
104743561 CDS
T05044
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC104743561
KO
K06100
symplekin
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104743561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104743561
03019 Messenger RNA biogenesis [BR:
csat03019
]
104743561
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104743561
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
104743561
U7-dependent histone pre-mRNA processing factors
104743561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
AAA_lid_9
Motif
Other DBs
NCBI-GeneID:
104743561
NCBI-ProteinID:
XP_019091398
LinkDB
All DBs
Position
14:13675223..13692940
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AA seq
1305 aa
AA seq
DB search
MAAPAAATARAQTLSLLAAANNHGDLAVKLSSLRQVKEILLSLEPSSSAEIFPYLAELHL
SREILVRKSLIEIIEEVGLRMLDHSYVLVNVLLVLSRDEDPVVAKKSISAGTTFFCSILE
EMAMQFHHHGNVDRWCGELWTWMVKFKDAVFSAALEPGCVGVKILSLKFMETFILLFTPD
ASDPEKVSSEGCRQMFNISWLAGGHPILNPATLMSEANRTFGILVDFIQSANRIPGALTI
SVISCLAVVARKRPVHYNTVLSVLLDFHPNLETVKGCHAASVQYSIRTAFLGFLRCTFSP
IIESRDKLLRAFRAMNAADVADQVLRQVDKLIRNNERAARENLSGKNNQSINHQNSWDMS
KKRIMPQGEDDKINGEVAPKRLRHNNNVHLTQQVQTSESLQAPVSINGISSSNHSSDSEL
TPVEQMVSMVGALLAEGDRGAASLEILISKLHPDMLADIVITSMKHLPSTPPTLTSSLAT
SADIVVSSSINTMYTPTPPPKLPFDPVLTSDVPSLNSSVADPRRDPRRDPRRMDPRRLNS
SLGPTSLPVGDGEESVPTQNDISTLLSKPVSVPAAMAGATGSVHPTAVDRSQNKLTGSSV
IRIIDQPDCREDPSNEKSSLDAPLSPCMYGEGIXEYIYTGLLVYRIYXMSVTFSDTYFQT
SGSXDQHLPATSDSTAPEESYRELAPVPSYVELTTEQSKTVGKLAIERLIESNRHVFGFD
CNKIRMALIARLIAKIDAGNDVATVLREHISVDHQEFKGHELVLHVLYHLHSMAILDTDE
SSPYATIYENFLIAVARSFLDALPASDKSFSRLFGEAPYLPDSAIKLLDELCSNRHGPVG
REICDSERVTQGLGAVWSLILVRPNERKACLAIALNCSIHSEEDIRAKAIRLVTNKLYHL
AYIAEHVEQFATDMLLTAVNSETDLSQSGSIAEGIKTETSGSLLSGSSDIYSQQDLQTSR
DVSVLSTSEVQRLISLFFALCKKKPSLLRLVFEVYGRAPKIVNQAFHRHIRPILIRELGS
SYTELLQIISDPPKGSENLLTLVLQILTQELAPSSDLIATVKLLYQTKLKDVSILIPLLS
SLTKDEVLPIFPPLRNLPPEKFQLALAHILQGSAHTGPALTPAEVLIAIHDIVPEKGGPP
LKKITDACSACFEQRTVFTQQVLAKALGQMVDRTPLPLLFMRTVIQAIDAFPTLVDFVME
ILSKLVRKQIWRLPKLWPGFLKCVSQTKPHSFPVLLELPVPQLESIMKKFPDLRPSLTAY
ANQPNIRASLPNSALSVLGLDNGQDSRSQMHPSDATSSIQGTALT
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccggctgctgcgacagcgagggcacagacgctatctctcctcgccgctgcc
aataaccatggcgatttggctgtgaagctctcgtctctcaggcaggttaaggagattttg
ctgtcattggagccgtcttcgtctgctgagatattcccctatctcgcagaactccactta
tcccgtgaaattctagttcgcaaatcccttatcgagatcattgaagaggttggtttgagg
atgctggatcattcttatgttctagtgaatgtcttactagtcttatcaagggacgaggat
ccagttgttgcaaagaaatccatttctgctggcaccactttcttctgcagcatcttggag
gagatggcaatgcagttccatcatcatggtaacgttgatcgttggtgtggggaactatgg
acatggatggttaagttcaaagatgctgtcttttccgctgcattggagcctggctgtgta
ggggtgaaaattctttctctaaagtttatggagacattcattttgctctttactcctgat
gcatctgatcctgagaaagtttccagcgaaggatgtagacagatgttcaatatttcctgg
cttgctggcggtcaccccattctgaatccagcaacgctcatgtctgaagcaaataggaca
tttggcatcttagtagatttcatacagtcagctaatcgtataccgggtgcactgacgata
tctgttattagttgtcttgcggtggtagcaaggaagaggcctgtccactacaacactgtc
ctctctgttctgctggattttcacccaaatcttgagacggttaaggggtgccatgctgca
agcgttcaatattccattagaactgcctttctgggatttcttagatgcactttctcacca
ataatagagtcaagagacaagcttcttagagcatttcgagcaatgaatgctgcagatgtt
gctgatcaagttctccgtcaagttgataaattgatcaggaataatgagcgtgctgcacgt
gaaaatttgtctggcaagaataaccagtcgattaatcatcaaaactcttgggatatgtca
aagaaacgaataatgccccagggtgaagatgataaaatcaatggagaggtcgctccgaag
cgcttacgccataataataatgtgcatttgacccagcaagttcaaacaagtgaatcccta
caggcacctgtctctatcaatggcatttcctctagtaaccattcttcagacagtgagttg
acaccagttgaacagatggtttcaatggttggtgctttgcttgctgaaggagacagagga
gctgcatcacttgaaattctcatttctaagcttcatccagatatgctcgctgatattgta
ataacaagcatgaaacacttgcctagtacccctcctacgttgacaagttcactggctacc
tcagcagatattgtggtatcttcttctataaataccatgtatactccgactcctccacca
aaacttccttttgacccagtacttacttccgatgtgcctagcttgaatagctcggttgct
gaccctagacgcgacccaagaagggatccccgtcgcatggatccaaggcgtttaaattca
tctttgggaccaacgtcgctacctgtaggtgacggtgaagaatcagttccaacacagaac
gacatctctaccttactgagtaagccagtttcagttcctgctgccatggcaggggctact
ggttcagtacatccaacagcagtagaccgtagccagaacaagttgacaggaagttcagta
atcagaataatcgatcagcctgattgcagagaggacccctcaaatgaaaaatcatcctta
gatgctccactatctccttgcatgtatggtgaaggcattnttgagtatatatatacagga
ttattagtctatagaatttattagatgtcagttactttttctgacacttattttcagaca
agtggctctnttgatcaacatctccctgcaacatcggacagtactgcaccagaagagagt
tatcgagagttggcacctgttccatcgtatgttgaacttaccacagagcaaagcaaaact
gtaggaaagttggctattgaacgactaatcgaatcaaatagacatgtctttgggtttgat
tgtaacaagatacgcatggcattgattgcccgattgattgctaaaatcgatgcgggcaat
gatgttgcaaccgtactaagagagcatattagtgtggatcatcaagaattcaaggggcac
gaacttgttttacatgttctctaccatctgcattcaatggcgattctggatacagatgaa
tcctctccctatgctactatttatgaaaattttcttatagcagtggcaagatcatttctg
gatgctcttcctgcttccgacaagtcttttagtaggctttttggagaagctccatatcta
cccgattcagccattaagctactggatgaactctgctccaatcgtcatgggccagttggt
agagaaatctgtgatagtgagcgtgtaacccaagggcttggtgctgtttggagcctaatt
ttagtgcgtccgaatgagcgaaaagcatgcttagctatagcattgaactgttctattcat
tctgaagaagatattcgtgcaaaagccatccgacttgttacaaacaaactatatcaccta
gcatacatagcagagcatgttgagcaatttgcaacagatatgttgctgactgctgtgaac
tctgagacagatctctcacagtctggatcaattgcagaaggaattaaaacagagacaagt
ggctctctattgtctggaagctccgacatttactctcaacaggatctacaaacttctcgt
gatgtttcagttttatcaacttccgaagttcagagactgatttccctgttcttcgcttta
tgtaaaaagaaacctagtctccttcgacttgtctttgaagtttatggaagagctccaaaa
atagtaaaccaggcttttcatcgacatatacgacccattctgatacgagaattaggttcg
tcttatacggaactactccaaataatatccgaccctcctaagggaagtgaaaatttattg
acattggtgttgcaaatattgacacaagaattggcaccttcttcggatttgattgctact
gtaaagcttctatatcaaacaaagctaaaggatgtttcaattcttatcccattgctttct
tcactcactaaagatgaggttttgcccatctttcctccccttcgtaatcttccgccagaa
aagtttcaacttgcacttgcccatatattacagggttctgctcacacaggccctgcacta
acacctgccgaggtactgattgctatccatgatattgttccagagaagggtgggccacca
ctgaaaaagataacagatgcatgttcagcttgctttgaacaacgcactgttttcacgcag
caagtcttagcgaaggccctcggtcagatggttgatcgaacacctctgcctttactcttc
atgagaacggttattcaggcaatcgatgcttttcctacactggttgattttgtcatggaa
attctttccaagttggtgaggaagcagatctggagactgccaaaattgtggcctggcttc
ttgaaatgtgtgtctcagacaaagccacattctttcccagttttgttggagttaccagta
cctcaacttgaaagcatcatgaagaagtttcctgatctaagaccttctctcactgcttat
gcgaatcagccaaatatcagagcttctctgccaaattcagctctttcagttcttgggctt
gacaatgggcaagattcgcgttctcaaatgcacccttcagatgcaacatcgtctattcaa
gggacagccttaacgtga
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