Camelina sativa (false flax): 104744575
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Entry
104744575 CDS
T05044
Name
(RefSeq) protein CLP1 homolog isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104744575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104744575
Enzymes [BR:
csat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
104744575
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104744575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
ATP_bind_1
GTP_EFTU
AAA_22
AAA_21
SRPRB
AAA_24
DUF1611
LRIF1
Motif
Other DBs
NCBI-GeneID:
104744575
NCBI-ProteinID:
XP_010463952
UniProt:
A0ABM0W0F7
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All DBs
Position
15:complement(1516512..1519476)
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AA seq
452 aa
AA seq
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MAYGGPSMNPPAMMTTGAVPGSGNLKQVKLERESELRIEVSEEPLRLRLVNGTAEIFGSE
LPPEIWRTFPPRLKFAVFTWYGATIEMDGVTETDYTADETPMVSYINVHAILDARRRLAK
ASTSNEPESSQGPRVIVVGPVDSGKSTLTKMLLSWAAKQGWKPTFVDLDVGQGSITIPGS
IAATPIEMPLDPVEGFTLDMALVYYYGHITPSGSSSANIELYKTLVKELAQVLERQFVGN
PESRAAGMVINTMGWIEGPGYELLLHAIDTFNASVVLVLGQEKLFSRLKDFLSRSKSNVD
VVKLHKSGGVVARAREFRQSSRNSRIQEYFYGLSKELSPYANTSSFSDLQVFRIGGGPQA
PMSALPIGSDRVSNPLRVTPVNIDNRDLLHSVLAVSYAEEPDQIVSSNVSGFVYVTEVDI
PRKKITYLAPSPGTLPSKFLIAGSLSWLESTK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggcttacggtggtccgtcaatgaatccaccggctatgatgactactggcgcagttccc
gggtctggtaatctgaagcaagtgaaattagagagagaaagcgagcttaggattgaagtc
tctgaggagcctctcagactccgtttggtcaacgggaccgctgagattttcggctctgaa
ctgcctcctgaaatctggcgtaccttccctcctcgcctcaaatttgcggttttcacatgg
tatggagcgacaattgagatggatggtgtcacggaaactgactatacagcagatgagaca
ccgatggtcagctacattaatgtgcacgcaatactagatgctaggagacgtttggccaaa
gcttccacatccaatgaaccagaatcttctcagggacctcgggttattgtagtagggcct
gtcgattccgggaagagcacgttgacaaagatgcttcttagttgggcagctaaacaagga
tggaaacctacatttgtagaccttgatgttggccaagggtcaattacaataccgggttcg
attgctgctacacctattgaaatgccactggatccagttgaagggtttactcttgatatg
gcccttgtatactactacggccacataacacctagtggctcttccagtgccaacattgaa
ctgtacaaaactctggtgaaagagcttgctcaagttctggagagacagtttgtaggaaac
cctgaatctcgagctgctggaatggtgatcaacacaatgggatggatcgagggtccgggt
tacgagctgcttctacatgcaatagacacattcaacgcctctgttgtactagtattgggt
caggaaaaactattcagcaggcttaaagacttccttagtagaagtaagagtaatgttgac
gtcgtgaaacttcacaagtctggtggagttgtagctagggccagagagttccggcaaagt
tcaagaaattctaggattcaggaatatttttacggtctatccaaagaactctctccgtat
gccaatacatcaagtttcagtgatctgcaagtgttcagaattggtggtggaccacaagct
ccaatgtcagctctgccaatcgggtctgaccgggtttcaaatccgttgagggtgacgcct
gtaaatattgataaccgggatctgctgcattctgttctggctgtctcatacgctgaagaa
ccagaccagattgtctcaagcaatgtttctgggtttgtgtatgtgacggaagttgatata
ccgaggaagaagataacgtatttagcaccatcgccagggacattacctagcaagttcttg
atcgctggatctttgtcatggcttgagtcaacgaaatga
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