Camelina sativa (false flax): 104745573
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Entry
104745573 CDS
T05044
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104745573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104745573
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104745573
mRNA degradation factors
5'-3' decay
Decapping complex
104745573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
104745573
NCBI-ProteinID:
XP_010465157
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All DBs
Position
15:5871966..5878484
Genome browser
AA seq
1350 aa
AA seq
DB search
MASSPGNINPPPPPPPFDLGTLFKPSSNPYPAPPASYPPPTGPFLHNNQYDQQQHYAPPP
ISAAQPSPVTQDVSSSATNLHPQRTLSYPTPPLNLQSPRSNHNPGTHILALLNNNGGAVP
NQEPSHQQLPVVNHNEIARSFPGGSGPIRVPSCKLPKGRRLIGEHAVYDVDVRLQGEIQP
QLEVTPITKYGSDPQLVVGRQIAVNKDYICYGLKGGNIRVLNINTALRSLFRGHSQRVTD
MAFFAEDVHMLASVSLDGKVFVWKISEGSEGDDQPQITGKIVCALQILGEQDTKHPRVCW
HCHKQENLVVSIGKHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQTVGKHDGEVTDL
SMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIILIT
GGPLNREMKIWVSAGEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIALSEAGL
LLLANAKRNALYAVHLDYGSSPVDSRMDYLSEFTVTMPILSFIGTNDPPEEPIVKVYCVQ
TLAIQQYTLDLSLCLPPPIENMGLEKSDSSVSREANLVEGMSEPSGLKPTDLPSVDSVPK
PSIIVNRSESANKLNFPSSEATAQAIAPPNGEPKTSGLPSETSGAGSAYAMSPQLPVSPR
LSRKLSGYNTPVDAVEPVIPHHELGGRAPSADYSVDRQMDAVGERNMDVSSVEENSRSKD
SNVKPDDDVSGMRRPSAFFKHPTHLVTPSEILMGVSSAEASTTTEDKRDRDTNIQDVNND
ARGAEVEVKEVSEARSTQNGESNNHEETANRTSENREKVFCSQASNLSTQMARDCYPSTE
GTFIPGESKAYGQPLQAGDESGVSPKLPDSGSSSGLPQSSATNSKGKKQKAKNSQGPGLS
STSSNLAESFNEQRESLSHPMTDSLPQFLAMQETMNQIMASQKEMQRQLSNAVTGPIVKE
SKRLEVALGRMIEKSSKSNADALWARFQEETAKNEKALRDHAQQIVSATTNFMSKELNTM
FEKTIKKELAAIGPALARSVTPVIEKTVSSAITESFQRGLGDKAVNQLDKSVNLKLEATI
ARQIQAEFQTSGRQALQEALRSGLESSVIPSFERSCKTMFEQVDSAFQKGIAEHTNAAQQ
RLDSGHSQLAHTLRETITSASSVAQALSRELAESQRNLLALAAAGANSGGSNPLITQLSG
GHLGGLLEKVEAPMDPTAELSRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRGLLAM
NPLPLSQGVLLSLLQQLACDISKDTSRKLAWMTDVVAAINPSDQMIAVHARPIFEQVYQI
LHHHRNAPGSDVSAIRLIMHVINSMLMGCK
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcacctggtaatatcaatcctcctcctcctcctcctccttttgatcttggt
actctcttcaaaccttcatccaatccttatccggccccgccggcttcttatcctccgccc
acaggtccttttcttcacaacaaccagtacgatcagcagcagcactacgctccgcctcct
atctccgccgctcaaccatcgccggtcactcaagatgtatcttcctccgcgactaacttg
catccacagagaacgctatcttatcccacgccacctctcaatctccagtctccccgttcc
aatcacaatcccggtacccacatcctcgctctccttaacaacaacggaggcgccgtgcct
aaccaagagccttcgcatcagcagcttccggtagtgaatcacaacgagatcgctcggtct
tttcccggtggttccggtcctattcgtgtcccgagctgtaagcttccaaaaggaaggcga
ttgattggtgaacacgcggtgtacgatgtggatgtgagattacaaggggagattcagccg
cagctcgaggtgactccgattacaaaatacgggtcagatcctcagctcgtagtgggccgg
caaatcgccgtgaataaggactatatatgctacggcttgaaaggaggaaacattagggtt
ctcaatataaacactgcattaaggtctctgttccggggccattctcagagagtgacggac
atggctttctttgccgaggatgttcatatgttggccagtgttagtctagatggaaaagtt
ttcgtgtggaaaatctctgaaggatctgagggagatgatcaaccccagataactgggaag
atagtttgtgctcttcagatactaggagagcaagacaccaaacatccacgtgtttgttgg
cactgccacaaacaggaaaatttggtagtttctattggtaaacatgtgcttcgtattgat
actaccaaagttggcagaggtgaagtattctctgctgaggcccctctccagtgtcccctt
gataaactgattgatggtgttcagactgtgggcaagcatgatggggaagttacagatttg
tcaatgtgccaatggatgaccacgcgcctggtttcttcttctgttgatggcacgatcaag
atatggcaagatcgtaaagcacaaccgcttgtagttttgaggcctcatgatggacatcca
gtcagttcagccacgttcgtgacgtctcctgagagacctgatcacatcatacttatcaca
gggggtcctctaaatcgagaaatgaaaatctgggtctctgccggggaagaagggtggctt
ctaccagctgatgctgagtcatggaggtgtacccagacacttgacttgaaaagttcaact
gagccacgagctgaagaggcattttttaaccaagtcatagcattatctgaagcaggattg
cttttacttgcaaacgcaaaaaggaacgccttatatgctgtgcatttagactatggttct
tctccagttgattcgcggatggattacctgtcagaatttacagtcactatgcccatattg
agttttattggaacaaatgatcctccggaagagcctattgttaaggtttattgtgttcag
actctagcaatccagcagtatacattggacttaagcttatgcttgccaccacccatagag
aatatgggtttggagaagtcagattctagcgtatcacgagaggcaaatcttgttgaaggc
atgtcagaaccatctggacttaagcctacagacttaccttcagttgattcagtgccaaaa
ccttctattatagtgaatagatcggaaagtgctaataagttgaattttccatcatcagaa
gccacagcacaagcaattgctccacccaacggtgaacctaaaacttctggcctgccatct
gagaccagtggtgcaggttctgcgtatgctatgtcaccccaacttcctgtaagtcccaga
ctatcaagaaaactttctggctacaacactcctgtagatgctgttgagccagttatacct
catcatgagcttggtggcagagcaccttctgctgactattctgttgataggcaaatggat
gctgttggagaaagaaatatggatgtgtcatccgtagaagaaaactcaagaagcaaggac
tcaaatgttaagcctgatgatgatgtgtctgggatgcgaagaccatcagctttttttaaa
caccccactcatcttgtaactccttcagagatattgatgggcgtttcgtccgctgaagcc
tccaccactactgaagacaagagagatagagatacaaatattcaggacgtaaataatgat
gcaagaggcgcagaagttgaggtgaaagaagtaagtgaagcaaggtcgacacagaatggt
gaaagcaataatcatgaagaaactgcgaatcgcacttcagaaaatagagaaaaagtcttc
tgctcacaggcttcaaatctcagcacccagatggcaagagactgttatcccagtacagag
ggaactttcattccaggggaatctaaggcttatggacaacctttacaggctggagatgaa
agtggtgtgtctccaaagcttcctgactcgggttcatccagtgggcttccacagtcctca
gctacaaatagcaaagggaagaagcagaaagccaaaaattcacaaggtcccggtctgtca
tctacatcctcaaatcttgctgaatccttcaatgagcaacgtgagagcttaagtcatccc
atgacagattcacttcctcagttcctagctatgcaagaaacaatgaatcagataatggct
tcacagaaggagatgcagagacaactatcaaatgctgtcactggccctattgtaaaagaa
agtaagagactagaagtggctttagggagaatgattgagaaatccagcaagtcaaatgct
gatgctctatgggcccgcttccaagaggagacagctaagaatgaaaaggcattgcgcgat
catgcacagcaaattgtgagtgcaacgacgaacttcatgagcaaggagttaaataccatg
tttgagaaaacgataaagaaggaattggctgcaattggtccagccctagcacgttcagtg
acaccagttattgaaaaaactgtatcttctgcaatcacagagtccttccagagaggactt
ggtgacaaagcagttaatcagcttgacaaatctgttaatttaaagcttgaagcaaccata
gctaggcaaattcaagccgaatttcagacctctggcaggcaagccctccaggaagctctt
aggtcgggtctagagtcctcagtcataccttcttttgagaggtcatgcaagaccatgttt
gagcaagtagactcagctttccagaaagggattgccgagcatacaaatgcagcccagcaa
cggcttgactctggacactcacagcttgctcatactttaagggaaacaattacttctgca
tcatcagttgctcaagccttaagccgtgaattagctgagagccaaaggaatctcttagct
ctcgcagctgctggagcaaattctggtgggtcaaatcccttgattactcaactaagtggc
ggacatttgggtggacttcttgaaaaggttgaagcacctatggacccaacagcagaactt
tcaaggttgatatctgaacgcaagtacgaagaatctttcacttcggcactacagagaagc
gatgtctctatagtatcatggctttgttcacaggtggatcttcgtggactactggcgatg
aatccgcttccgctgagccaaggcgtgcttctttcactgctgcagcagctggcctgcgac
atcagcaaagacacatctcgtaagcttgcttggatgactgatgtggtggcagccataaac
ccatcagatcagatgattgcggtacacgctcgcccaatcttcgaacaggtatatcagatt
ctgcaccatcaccgaaacgcaccgggcagcgatgtctcagccatcaggctgataatgcac
gtcatcaactccatgcttatgggctgcaagtga
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