Camelina sativa (false flax): 104746363
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Entry
104746363 CDS
T05044
Name
(RefSeq) pre-mRNA-processing protein 40B-like isoform X2
KO
K12821
pre-mRNA-processing factor 40
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104746363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104746363
Spliceosome [BR:
csat03041
]
Complex A
U1 snRNP components
U1 related factors
104746363
Complex B
104746363
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
FF_RHG35_4th
WW_TCERG1
WW_2
Motif
Other DBs
NCBI-GeneID:
104746363
NCBI-ProteinID:
XP_010466123
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Position
15:complement(10684019..10696163)
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AA seq
872 aa
AA seq
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MPPPYVQTPDTSMPGFGGPRALFSYPSATSYEGSRAPTQVTGPSSHSQAQQRASISQTTA
QSSIMNPTFEQPKAALFQSIPSQEALTDWVEHISPDGRKYFFNKRTKRSTWEKPVELMTL
FERADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIAREQAEKASVQGPHAESSID
ASKVLSRSDTASTAAPTGIPSQTSTSDASENLALSSDLKQPASVPGSSSPVEFVDGVQMT
AEKTSLLCDIVETDGPSVTVTNTSAATLVKKDEISVGISGDSDDMSAKNTNEGSETAPDE
SQKHMVESERVESQPEEKQILQENFSCDNKLEPWDVFKSLLESANVGSDWTWEQAMREII
NDRRYGVLRTLGERKQAFNEFLAQMKRSAEEERLARQRKRYDEFKRMLEECVELSPSTRW
SKAVTMFEDDERFKALEREKDRRNIFEDHVNELKEKERVKALEDRKRNIIEYRRFLESCN
FIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEERQKIQKEELKKAER
KHRDEFRGLIDEHIGTGELTAKTSWRDYLVKVKDLPVYSAITSNSSGATPKDLFEDAVED
LKRKYHDLKSQIKDVLKLRKVTLSGGSTFDEFKASISEDISVPPISDLKLKLVFDDLLER
EKEKEEKEARKQTRQTEKLVDMLRSFKDITASSSWEESKHLVEGSERCRAIGDESFRKHT
FEDYVSHLKEKSKRIKQNKKIPEDVREEHDKGKDKYGRERDRVRERDSEDHHKKGAADNH
NHDMNEPHGRERRRSGRDSHNRHRERHTSVKENDTDHLKESHKAGGGHKKSRQQRGVVPE
AGDDGREKRRRKEEESERTKEEELEDGECGRY
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgcccccgccttatgtacaaactccagatactagtatgcctggctttggtgggcctagg
gcactcttttcttatccgagtgcaacatcttacgaaggttcgagggcaccaactcaagtc
actggaccaagcagtcatagtcaggcacaacagagagcttctatcagccagacaactgca
caatcttctatcatgaatccaacatttgaacaaccaaaggcagctctttttcaatctata
ccttctcaagaggctctaacagattgggttgagcatatctctccggatggaaggaaatat
tttttcaacaagaggacaaagcggtccacttgggagaagcctgttgagttgatgactctt
tttgagagagcagatgcaagaacggactggaaagaacattcaagtcctgatggaagaaag
tattattacaataagattaccaagcaatcaacatggacaatgcctgaagagatgaagatt
gcgcgtgaacaagcagaaaaagcatctgttcaagggcctcatgctgaaagcagtattgat
gcttctaaggtgctgtctcgctctgatactgcatcgactgcagctcctactggtatacca
agccaaacgtcaacctctgatgccagtgagaacctagctctttcttctgatttgaagcag
ccagcttcagttcctggaagttcttctccagtcgaatttgttgatggagttcagatgact
gcagagaaaacatcactattgtgtgatattgtagaaactgatggtccttctgtcactgtg
acgaatacttctgctgctacattggttaagaaggatgaaatttcagtcgggatcagtgga
gattcagatgacatgtcagccaaaaacacaaatgaaggtagtgagactgcaccagacgaa
agccaaaagcatatggtggaaagtgaaagagttgagagccaaccggaagaaaaacaaatt
cttcaagagaatttttcttgtgacaataaattggaaccttgggatgtattcaaatcactt
ttggaatccgccaatgttggatctgactggacatgggagcaggccatgagagaaattatt
aatgacagaagatacggtgtgctaaggactcttggagagcggaaacaagccttcaatgag
ttcttagcacaaatgaaaagatcagctgaagaggaaaggctagccagacagagaaaacgg
tatgatgaatttaaaaggatgttagaggaatgtgtggagctttccccttctactcggtgg
agcaaggctgtgacaatgtttgaagacgatgagcgtttcaaagctcttgaaagagaaaaa
gaccgtcgtaatatttttgaagatcatgtcaatgagctaaaggagaaggagcgagtgaaa
gctcttgaggatcgcaagcggaacataattgaatacagaagatttttggaatcttgcaat
ttcatcaagcctaatagtcaatggcgcaaagttcaggaccgactagaagtggatgaaaga
tgttcacgccttgagaaaattgatcaactggaaatctttcaggagtatctgcgtgatctg
gagagggaagaagaggagagacagaagatacagaaggaggaactcaaaaaagcagagcga
aagcatcgtgatgagttccgtgggctgatagatgaacatattggaacaggagagcttact
gccaaaaccagttggcgtgattatttagtgaaggtcaaagatttaccagtatattcagca
attacgtcgaattcatctggagctactccaaaagacttatttgaagacgctgttgaggat
ttgaaaagaaagtaccacgatctcaagtctcagataaaggatgtattgaagttgagaaag
gtaacattatccggtggatcaacatttgatgagtttaaggcctcaatttccgaggatatc
agtgtcccgcctatttcggaccttaaactaaagttagtttttgatgatttgctggaaagg
gaaaaggagaaggaagaaaaagaagccagaaaacagacacggcagactgaaaaattggtg
gatatgcttcgttccttcaaggatataactgcctcttcatcctgggaggaatcaaagcat
ctcgttgaaggtagtgaaagatgccgtgctattggcgatgagagctttcggaagcataca
ttcgaagattatgtatcacacctcaaagagaaatcaaaaaggatcaaacagaacaagaag
atacctgaggatgtgagagaggaacatgacaaggggaaagataaatacggaagagaaagg
gacagagtccgagaaagagacagtgaggatcatcataagaaaggtgcagctgataatcac
aaccatgatatgaatgaaccccatggaagagaacgtagaagatcaggaagagatagccat
aacagacatcgagaaagacatactagtgtgaaggaaaatgacacagaccatctcaaagaa
tcccataaagctggtggtggccacaagaaatcaagacaacagcgaggtgtagtccctgaa
gcaggggatgacggcagggaaaagcggcgtagaaaagaggaagagagtgagagaacaaag
gaagaggagcttgaagatggagaatgtggtaggtattga
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