Camelina sativa (false flax): 104746382
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Entry
104746382 CDS
T05044
Name
(RefSeq) pre-mRNA-processing protein 40C-like
KO
K12824
transcription elongation regulator 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104746382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104746382
Spliceosome [BR:
csat03041
]
Complex A
U1 snRNP components
U1 related factors
104746382
Complex B
104746382
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
CEP164_N
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
104746382
NCBI-ProteinID:
XP_010466146
UniProt:
A0ABM0W5X6
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All DBs
Position
15:10806461..10812749
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AA seq
835 aa
AA seq
DB search
MQGDNPAEPPYTTAVSTGQGISVRPPPSGPVLANASSVSPGIQSELKEQPSMSIANTGFV
SQSVPSSVTAQWSSNAAASSNVNPPMLQNLPFGRPGTLAPPGLMISPPAFLGSNPFSTTP
RPGMSGGPPQVNPFNRPHMYPPYHSQPTMPGAPQGVWLQPPPMGGIPRGPFLSRPTPFPG
SYPFPVRGISPNVPYSGSQPLGAIPMGSVGNVHALPGHQLDKSPGQTEALSGIDDRAGTQ
PVGNRLDAWTAHKSETGVVYYYNSVTGQSTYEKPPGFGGEPDKVPVQPIPVSMENLPGTD
WALVSTNDGKKYYYNNKTKVSSWQIPAEVKDLEKKPEERAVESLASVPSTDLTEKGSDQA
SLSAPAISNGGRDAASLKTTNFGSTALDLVKKKLHDSGVPVSSTTTSEANGGKAIEVTPS
GESGNGSGKVKDAPEAGDLSDSSSDSEDEDSGPSKEEYFKQFKEMLKEKGIAPFSKWEKE
LPKIIFDPRFKAVPSHSVRRSLFEQYVKTRAEEERREKRAAHKAAIEGFRQLLDEASTDI
DQHTDYRTFKKKWGNDLRFEALERKEREALLKERVLSLKRTAEQKAQEIRSAAASDFKTM
LREREVPINSHWSKVKDSLRNEPRYRSVAHEDREVFYNEYIAELKAARRGDDHEMKARDE
EDKLRERERELRKRKEREVQEVERVRQKIRRKEASSSYQALLVEIIRDPEASWTESKPKL
ERDPQKRASNPDLDPADKERLFRDHVKSLYERCVHDFKALLVEALSSETASQPTEDGKTV
LNSWSTAKQVLKPDIRYSKMPRDDREAYWRRYAEDISRKQKQENYQEEKHRDYKT
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggggataatccagcggaaccgccgtatacgacggcggtatctactggacagggt
atctccgtccgtcctcctccaagtggtccagtcttggccaacgcttcgagcgtctctcca
ggcattcaatcggagctgaaggagcaaccctctatgtctattgctaatacaggttttgtc
tctcagtctgttccgtcttctgttactgcacaatggagttccaatgcagctgcctcatca
aatgttaatccgcccatgctacaaaatctgccttttggtcgaccaggaacactcgcccct
cctggactaatgatatctccgcctgcttttcttggttccaaccctttttctacaactcca
agacccgggatgtctggaggtcctccgcaagtcaacccttttaatcgtccccacatgtat
cctccatatcactcacagcctacaatgcctggagcgcctcaaggagtgtggttgcagccc
cctcctatgggtggtattcccaggggaccatttctatcacgtcctactccctttcctggt
tcatatccatttccagttcgtggaatctctcctaacgtaccatattctggttctcaacct
cttggtgccattcctatgggaagtgttggcaacgttcatgcattaccaggtcatcagctt
gataaatctcccggacaaacagaagcactctcaggaatcgatgacagagctgggactcaa
ccagtagggaatcggttggatgcctggactgcacataaatcagaaacaggagtagtttac
tattataattccgttacagggcaatcgacctacgaaaagcctcctggttttggaggggag
cctgataaagtgccggtgcagccaattcctgtttctatggagaatttacctgggacggat
tgggctcttgtgtccacaaatgacggcaaaaagtattactacaacaataaaacaaaggtt
agcagttggcaaattccggcagaggtgaaagatttggagaagaaaccggaggagagggct
gtggagagtttagcttctgtgcctagtactgatttaactgaaaagggttctgaccaagca
agtttgagcgcacctgctattagcaatggaggccgggatgctgcatctctaaaaactaca
aattttggttcgactgcactggatttagtgaaaaagaaactacatgattcgggagtgcct
gtctcatctacgacaacatctgaagcaaatggtggtaaagcaattgaggtcacaccaagt
ggagaaagtggaaacggttcgggtaaggtaaaagatgctcctgaagctggtgacctttct
gattcttcttcagattccgaagatgaagatagcggaccatcgaaggaagagtatttcaaa
cagtttaaggaaatgctgaaagagaaaggaatagcaccgttttctaaatgggagaaggaa
ttgccaaaaattatctttgaccctcgctttaaggcagtaccaagtcattctgttagaaga
tctttgttcgagcagtacgtaaagacacgcgctgaagaagaacgtagggaaaagcgtgct
gctcataaggcagctattgaaggtttcaggcagttgctggatgaagcgtctacggacatt
gatcaacacactgattatcgtacttttaaaaagaaatgggggaatgatctccggttcgaa
gcacttgagcggaaggaacgggaggctttgctgaaagaaagagtcctttctttgaaacgg
actgctgaacaaaaggcacaagaaattcgctcagctgctgcctctgattttaagacaatg
ctacgtgaaagagaagtaccaataaattcacattggtccaaggtgaaggatagtctgaga
aatgaaccaagatatagatccgttgcgcacgaggacagagaggttttttataatgaatac
attgctgagctaaaagctgcgagaaggggagatgatcatgagatgaaagccagagacgaa
gaggacaaactgagagaacgggagcgtgagttgcggaaacgcaaagaaagagaagtgcaa
gaggtggaaagagtacgacaaaaaattagaaggaaagaggcaagctcctcttatcaagct
ttgttagtggaaataatcagagaccctgaggcatcctggacggaatctaagccaaaactt
gagagggatccgcaaaaacgcgcctctaatccagatttagatcctgctgataaagagagg
ctattccgtgatcacgtaaagtcattgtatgagcgatgtgttcatgacttcaaagctctt
cttgttgaagccttgtcatctgaaactgcttctcaaccaacagaagacgggaagactgtt
cttaattcctggtcaacggctaaacaagtgctaaaacccgatatccgctacagcaaaatg
ccgagggatgatagggaagcctattggcgacgatatgctgaggatatctcgaggaaacag
aaacaagaaaactatcaagaggagaaacatagagattacaagacctag
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