Entry |
|
Name |
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
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KO |
|
Organism |
csat Camelina sativa (false flax)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:csat00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104746793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:csat03019]
104746793
03036 Chromosome and associated proteins [BR:csat03036]
104746793
Enzymes [BR:csat01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104746793
Messenger RNA biogenesis [BR:csat03019]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104746793
mRNA degradation factors
5'-3' decay
Decapping complex
104746793
Chromosome and associated proteins [BR:csat03036]
Eukaryotic type
Gene silencing
piRNA pathway
104746793
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
2:397482..400569
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AA seq |
484 aa
MNNRGRYPPGNGAGRGAINPNPNYQSRQGYYQQQPQPQYVQRGGYAQNHHQQAPSQPHQY
QQQQQQQQQWLRRAQIPSGGNSNGDAVVEVEKTVQSEVIDPNSEDWKAKLKLPAPDTRYR
TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK
TAAFCIPVLDKIGQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKD
DIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFL
PENRQILMFSATFPVTVKAFKDRFLTNPYVINLMDELTLKGVTQFYAFVEERQKIHCLNT
LFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRN
LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLY
VFLS |
NT seq |
1455 nt +upstreamnt +downstreamnt
atgaacaatcgaggaaggtatcctcccggaaatggcgctggccgtggtgccattaaccct
aaccctaattaccaatcacggcagggctattatcaacagcaaccacagccacaatacgtt
cagcgcggtggttacgctcagaatcaccaccaacaagcgccgtctcagccacatcaatac
caacaacagcaacagcaacaacaacaatggcttcgacgagctcagatcccctccggcggt
aacagtaacggtgatgcagttgtagaagttgagaaaactgttcagtccgaagttatcgac
ccaaattcagaagattggaaggctaagctaaaactacccgcacctgatactcgctacaga
acagaggatgtgacagccaccaaagggaacgagtttgaagattattttttgaaacgggag
cttctcatggggatttatgagaagggttttgaaagaccttctcctattcaggaagagagt
attccaattgccttaactggtagagatatccttgccagagcaaagaacgggactgggaag
actgccgccttttgtattcctgtcttggataaaattggccaagataacaacgttattcaa
gctgttataattgttccaactcgagaattagcccttcagacatcacaagtgtgtaaggag
ctgggtaagcatttgaagattcaagtcatggtgaccacagggggaaccagtctgaaagac
gatattatgcgtttgtatcagcctgtccatttactggtaggaactcctggcagaattctt
gatcttaccaagaaaggtgtttgtgttttgaaagattgttcggtgctcgttatggatgag
gctgataagcttttgtctcaagagttccaaccttcagtggaacatttgattagctttctt
ccggaaaatcgacagatattgatgttctcagccacgtttcctgtcactgtcaaggctttt
aaggatagatttctgacgaatccttacgtcatcaatctcatggatgaacttacgctcaag
ggtgttacccaattctatgcattcgtagaagagagacagaagattcattgcttgaataca
ctattctccaagctgcaaattaaccaatcaatcatattctgtaattctgtaaaccgtgtg
gagctcttagctaaaaaaatcacagaacttgggtattcgtgcttttacattcatgcaaag
atgcttcaagaccaccggaacagagtgttccatgattttcgcaacggtgcatgccggaat
ctcgtgtgtactgacttgttcacacgtgggattgacattcaagcagtcaatgtggtgata
aactttgatttccccaaaaatgcagaaacttatctccatagggttggtcgatcaggaagg
tttggccatcttggtttagctgtgaatcttatcacctatgaggaccgatttaacctgtat
gtctttctctcttga |