Camelina sativa (false flax): 104747232
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Entry
104747232 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104747232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104747232
03041 Spliceosome [BR:
csat03041
]
104747232
03009 Ribosome biogenesis [BR:
csat03009
]
104747232
03016 Transfer RNA biogenesis [BR:
csat03016
]
104747232
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104747232
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104747232
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104747232
Complex C
U4/U6.U5 tri-SnRNP related factors
104747232
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
Pre-60S particles
Helicases
104747232
Transfer RNA biogenesis [BR:
csat03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104747232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
104747232
NCBI-ProteinID:
XP_010467134
LinkDB
All DBs
Position
15:19809832..19817211
Genome browser
AA seq
994 aa
AA seq
DB search
MNTQMEEPETLGKRKVAESSKLADESPTPEPTTKRRSLKRACVHEVAVPNDYTPTKEETI
HGTLDNPVFNGDMAKTYPFQLDPFQSVSVACLERKESILVSAHTSAGKTAVAEYAIAMAF
RDKQRVIYTSPLKALSNQKYRELQHEFQDVGLMTGDVTLSPNASCLVMTTEILRAMLYRG
SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYL
HKQPCHVVYTDFRPTPLQHYAFPVGGSGLYLVVDDNEQFREDNFSKMQDTFPKPKSVDGK
KSANGKSGGRGAKGGGGPGDSDVYKIVKMIMERKFEPVIIFSFSRRECEQHALSMSKLDF
NTDEEKEIVEQVFTNAIQCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLF
QEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDE
RGICIIMIDEQMEMNTLRDMMLGKPAPLLSTFRLSYYSILNLLSRAEGQFTAEHVIRHSF
HQFQHEKALPDIGNKVSKLEEEAAILNASGEAEVAEYHKLQLDIAQHEKKLMSEIIRPER
VLCFLETGRLVKIREGGTDWGWGVVVNVVKKSSVGTGSASSNGGGYIVDTLLHCTTGLSE
NGAKPKPCPPRPGEKGEMHVVPVQLPLISALSRLRVSVPSDLRPVEARQSILLALEELTN
RFPLGFPKLHPVKEMNIQDTEIVDLVSQIEEVEQKLLAHPMHKSQDDQQIKSFQRKAEVN
YEIQQLRSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVT
ELMFNGTFNDLDHHQVAALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEIQHEC
KLEIDVEEYVESTIRPFLMDVIYSWSKGASFAEIIQMTDIFEGSIIRSARRLDEFLNQLR
AAADAVGESSLESKFAAASESLRRGIMFANSLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgaacacccaaatggaagaaccagagacgctcggcaaaagaaaagtagctgaaagctca
aaacttgctgatgagtctccaacgcctgaaccaacgacgaagcgtagaagccttaaacgt
gcttgtgtacatgaagtcgctgttcccaacgattatacaccaacgaaagaggagacgatt
catgggacgcttgataatcctgtcttcaatggagacatggccaagacctatccttttcag
ctcgacccttttcagagcgtatctgtagcttgcttagagaggaaagagtcgattttggtt
tctgcccatacttcagctggtaaaactgcagtcgctgagtatgctattgcaatggcgttt
agagataagcagagggttatttatacttcacccttgaaagctttgagtaatcagaagtat
agagaattgcagcatgagtttcaagatgttggtttgatgactggtgatgttactctctca
cctaatgctagttgtttggttatgacaacagagatcctgagagccatgctttatagaggg
tctgaagtcttgaaggaggttgcttgggttatctttgatgagattcattacatgaaggat
agggaaagaggagttgtttgggaagagagtattattttcttgccacctgctattaagatg
gtttttctttcagccacaatgtcgaatgctactgaatttgcagaatggatatgttatctg
cacaagcagccatgtcatgttgtgtacacagattttaggccaactcctttgcagcattat
gcttttcctgtcggtgggagtggactgtaccttgtggttgatgacaatgagcaatttagg
gaggacaattttagtaagatgcaggatactttcccgaaaccgaaatctgttgacgggaaa
aagagtgcaaacggtaaatcaggtggtaggggtgctaaaggtggaggtggacctggtgat
tctgatgtttacaaaattgttaagatgatcatggagagaaaatttgaaccagtcatcatc
ttcagcttcagtagaagagagtgtgaacagcatgcattgtcaatgtcaaaacttgatttt
aatacagatgaagagaaagagattgtggaacaggtgttcactaatgctattcagtgcttg
aatgaggaggatagatctttacctgccattgaactgatgttgccactgctgcaacgtggt
attgctgtccatcattctggtcttcttcctgtcatcaaggaattagtggagctgcttttt
caggaaggacttgtgaaagcactttttgccacagaaacttttgctatgggtttgaacatg
cccgcaaaaactgtagtgtttactgctgtgaagaagtgggatggtgacagccatcgttac
attggctctggtgaatatattcagatgagcggcagggctggacgtcgtggaaaggacgaa
cgtggcatctgcattattatgattgatgaacagatggagatgaatacactcagggacatg
atgttgggcaaaccagccccgttgcttagtacttttaggttgagttactactcaattttg
aatttattgagtcgtgccgaaggacaatttactgctgagcatgttataaggcactcgttc
catcaattccagcatgaaaaggctttaccagatattgggaacaaggtttccaaacttgaa
gaggaagctgccatccttaacgcttctggagaggcggaggttgctgaatatcataagcta
caacttgacatagctcaacatgaaaagaaacttatgtcagaaataataaggcctgaaagg
gtgctttgttttcttgaaactggtcggctggttaagattcgagaaggtggaacagactgg
ggttggggagttgtagttaatgttgttaaaaaatcttcagttggaactggttcggcttct
tcaaatggtggcggatatatagtggatacactacttcattgcactactggtcttagcgaa
aatggtgcaaagccaaagccatgccctccccgtcctggggaaaagggtgagatgcatgtg
gttcctgttcagctacccttgatttctgctttgagcagactaagggtatcagttccttct
gatcttcggccagtagaagcaagacagagcatactacttgcattagaggagttgacaaat
cgcttccctctagggttcccaaaactccatccagtcaaggaaatgaatattcaagataca
gagatagtggatctggtcagccaaatcgaagaagttgaacagaagttacttgctcatccg
atgcacaagtctcaagatgatcaacaaatcaagagtttccagaggaaagcagaggtgaat
tatgagattcagcagctgagatcgaaaatgcgtgattcccagctccaaaagtttcgggat
gagcttaaaaatcgctctcgggtattaaagaaacttggacacattgatgcggatggtgtc
gtccagttgaaaggacgagctgcgtgcttgatagacacaggggatgaattgcttgtcact
gaactgatgtttaatggtacttttaatgatctggatcatcaccaagtagcagcccttgca
agctgttttattcctgtggataaatcaaatgaacaggtaaatttaagaaatgaacttact
aaaccattgcagcagctccaagatagtgcacgaaaaattgcagagatacaacatgaatgc
aagctggaaattgacgttgaagagtatgtggaatccaccatcaggcctttcctgatggat
gttatctactcttggtcaaagggcgcgagctttgcagagattatacaaatgactgacata
tttgagggtagtatcattaggagcgctagaaggctcgatgagtttttgaaccagcttcga
gctgcagcggatgcagttggagaaagcagtttagagagcaagtttgcagctgctagcgag
agcttgcgacgaggtattatgtttgcaaattcgctttacttgtaa
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