Camelina sativa (false flax): 104747727
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Entry
104747727 CDS
T05044
Name
(RefSeq) phytochrome B-like isoform X1
KO
K12121
phytochrome B
Organism
csat
Camelina sativa (false flax)
Pathway
csat04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
104747727
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Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_8
PAS_3
sCache_3_2
Motif
Other DBs
NCBI-GeneID:
104747727
NCBI-ProteinID:
XP_010467718
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Position
15:27691394..27696624
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AA seq
1168 aa
AA seq
DB search
MVSGGTGGGRVGEGAASSSHHTANNNNNKRRGEQAQSSGTKSLKPQESSMSKAIQQYTVD
ARLHAVFEQSGGSGKSFDYSQSLKSTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVD
ESSFGIIGYSQNAREMLGLMPQSVPSLEKPEILTMGTDVRSLFTSSSSILLERAFVAREI
TLLNPVWIHSKYTGKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQ
LQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYP
ATDIPQASRFLFKQNRVRMIVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMAN
MGSIASLAMAVIINGNDDDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQA
FGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYH
GKYYPLGVAPSEVQIKDIVEWLLANHADSTGLSTDSLGDAGYPGASALGDAVCGMAVAYI
TKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETAEM
DAIHSLQLILRDSFKESEAAMNSKTVDGAVQPYKDMAGEQGIDELGAVAREMVRLIETAT
VPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEETVSKLLSRALRGDE
EKNVEVKLKTFSPELQGKAVFVVVNACSSKDYLNNIVGVCFVAQDVTGQKIVMDKFINIQ
GDYKAIVHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWSNSEVIGKMLVGEVFGSSCRL
KGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRNGKFVQALLTANKRVSLDGKVIGAFCFL
QIPSLELQQALAVQRRQDTECFTKAKELAYICQVIKNPLSGMRFANSLFEATDLNEDQKQ
FLETSVSCEKQISRIVGDMDLESIEDGSFELKRAEFFLGSVINAIVSQAMFLLRDRGLQL
IRDIPEEIKSVAVYGDQIRIQQLLSEFLLSIIRYAPSQEWVEIHLSQVSKQMANGFATIR
TEYRMACPGEGLPPELVRDMFHSSRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFL
IILELPDPRKRPLSTASGSGDMMLMMPY
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggtttccggaggtaccggcggcggccgcgtcggagaaggagcggcgtcgtcaagtcat
cacactgctaataataataacaacaaacggagaggagaacaagctcaatcttctggaacg
aaatctctcaaaccacaagaatcctcaatgagcaaagcgattcaacagtacaccgtcgac
gcgaggctccacgccgtcttcgaacaatccggcggatcaggcaaatccttcgactactct
caatcactcaaatcgacgacgtacggttcctccgtccccgagcagcagatcaccgcgtat
ctctcccgaatccagagaggaggttacattcagcctttcggatgcatgatcgccgtcgac
gaatcgagcttcggtatcatcggttacagccaaaacgctagagaaatgttggggctcatg
cctcagtctgttcctagtcttgagaagcctgagattctaaccatgggaactgacgtgagg
tcgttgttcacttcctccagctcgattctactcgagcgtgccttcgtggctcgagagatc
acgttgttgaatccggtttggatccattccaagtatactggtaaaccgttttacgccatt
ctccataggattgatgttggtgttgtgattgatttagagccagctagaactgaagatccg
gcgctttctatcgctggtgcggttcagtctcagaaactagcggttcgtgctatttcgcag
ttacagtctcttcccggtggagatattaagcttttgtgtgacactgttgttgagagtgtg
agggacttgactggttatgatcgtgttatggtttataagtttcatgaagatgagcatgga
gaagttgtagctgagagtaagcgggatgatttggagccttatattggactgcattatcca
gctactgatattcctcaagcgtcacgtttcttgtttaagcagaatcgtgttcgaatgatt
gttgattgtcatgccacgccggttcttgtggtccaggacgataggctgactcaatctatg
tgcttggttggttctactcttagggctcctcatggctgtcactctcagtatatggctaac
atggggtctattgcgtctttagctatggcggttataattaatgggaatgatgatgatggg
agcaatgtagctagtgggagaagctcaatgaggctttggggtttagttgtttgtcatcac
acttcttctcgctgtataccgtttccgctaaggtatgcttgtgagtttctgatgcaggct
tttggtttacagttgaatatggaattgcagctagctttgcaaatgtcagagaaacgcgtt
ttgagaacgcagacactgttgtgcgatatgcttctgcgtgactcgcctgctggaattgtt
acacagagtcctagtatcatggacttggtgaaatgtgacggtgcagcatttctttaccac
ggcaagtattacccgttgggtgttgctcctagtgaagttcagataaaagatattgtggag
tggttgcttgcgaatcacgcggattcaactggattaagcactgatagtttaggcgatgcg
gggtatcctggtgcatctgccttaggggatgctgtgtgcggtatggcagttgcatatatc
acaaaaagagactttcttttctggtttcgatctcacactgcgaaagaaatcaaatgggga
ggcgctaagcatcatcccgaggataaagatgatgggcaacgaatgcatcctcgttcatcc
tttaaggcttttcttgaagttgttaagagccggagtcagccatgggaaactgcggaaatg
gatgcgattcactcgctccagcttattctgagagactcttttaaagaatctgaggcggcc
atgaactctaaaactgtggatggtgcggttcagccatataaagatatggcaggagagcaa
gggattgatgagttaggtgcagttgcaagagagatggttaggctcatcgagaccgcaact
gttcctatattcgctgtggatgccggaggctgcatcaatggatggaacgctaagattgca
gaactgacaggtctctcagttgaagaagctatggggaagtctctggtttctgatctaata
tacaaagagaatgaagaaactgtcagtaagcttctttctcgtgctttgagaggggacgag
gaaaagaatgtggaggttaagctgaaaactttcagccccgaacttcaaggcaaagcggtt
tttgtggttgtgaatgcgtgttccagcaaggactacttgaacaacattgtaggcgtctgt
tttgttgcacaagacgttactggtcagaaaatcgtaatggataagttcatcaacatacaa
ggagattacaaggctattgtccatagcccaaacccgctaatcccacctatatttgctgct
gacgagaacacgtgctgcctggaatggaacacggcgatggaaaagcttacgggttggtcc
aacagtgaagtgattgggaaaatgctcgttggggaagtgtttgggagcagttgcaggcta
aagggtcctgatgctttaaccaagttcatgattgtattgcataatgcgattggtggccaa
gacacggataagttccctttcccgttttttgaccgaaatgggaagtttgttcaggctctg
ttaactgcaaacaaacgggttagcctcgacggaaaggttattggggctttctgcttcttg
cagatcccgagtcttgagctgcagcaagctttagcagtccaacggaggcaggacacagag
tgtttcacgaaggcgaaagagttagcttatatttgtcaggtgataaagaatcctttgagc
ggtatgcgtttcgcgaattcattgtttgaggccacggacttgaacgaggatcaaaagcag
ttccttgaaacaagtgtttcttgtgagaaacagatctcaaggatcgtcggtgacatggat
cttgaaagcattgaagacggttcgtttgagctaaagagagcggagtttttcctcggaagt
gtcataaatgcgattgtaagccaagcgatgttcttattaagggacagaggtcttcagctg
atccgtgacattccagaagagatcaaatcagtagctgtttatggagaccagataaggatt
caacaactcctgtctgagtttctgctgagtataatccggtatgcaccatctcaagagtgg
gtggagatccatttaagccaagtttcaaagcaaatggctaatggattcgccactatccgc
acagaatacagaatggcgtgtccaggtgaaggactgcctccagagctggtccgagacatg
ttccacagcagcaggtggacaagccctgaaggtttaggtctaagcgtatgccgaaagata
ttaaagctaatgaacggtgaggttcaatacatccgagaatcagaacggtcatatttcctc
atcattctcgaactccctgatcctaggaaacgcccattgtcaaccgcgagtggcagcggt
gacatgatgttgatgatgccatattag
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integrated database retrieval system
