KEGG   Camelina sativa (false flax): 104747878
Entry
104747878         CDS       T05044                                 
Name
(RefSeq) THO complex subunit 6-like
  KO
K13175  THO complex subunit 6
Organism
csat  Camelina sativa (false flax)
Pathway
csat03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    104747878
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104747878
   03041 Spliceosome [BR:csat03041]
    104747878
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     104747878
Spliceosome [BR:csat03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    104747878
SSDB
Motif
Pfam: WD40_Prp19 WD40 EIF3I WDR55 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_Nup120_160 NBCH_WD40 Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_DCAF4 PKD Beta-prop_VPS8 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 104747878
NCBI-ProteinID: XP_010467890
LinkDB
Position
15:29839149..29842138
AA seq 369 aa
MYGDATNWNEDEYREAILKEREIQTRTVFRTAWAPPVPARIPNPDAFVVASSDGTLAFHS
LNSLVSQSASFGYSKGQDVMVAEPERVVRAHDGPAYDVKFYGEDEDALLLSCGDDGRVRG
WRWKEFAESEASLHLEENHAKPLIELTNPQHKGPWGALSPMPEINAISVDPQSGSVFTAA
GDSCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCQTGKCIRV
IGSQDKKSRLRISSMALDGSESWLVCGQGKSLALWNLPASECVSTISIPAHVQDVMFDEK
QILTVGAEPLLRRFDLNGALLSQIHCAPCSVFSISMHPAGVVAVGGYGGLVDVISQFGSH
LSTFRSSSL
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgtacggagacgctacaaattggaatgaagatgagtatagagaagcaatactgaaggag
cgagagatacagacgcgtacagtattcagaaccgcctgggctcctcctgttccggcgaga
atccctaatccggacgcctttgtcgttgcttccagcgatggaaccttagcttttcattct
ctgaactcgcttgtttctcaatcggcgagttttggctactcgaaaggtcaggatgttatg
gtggctgaacctgagagagtggttagggcacacgatggccctgcttatgatgtcaagttc
tacggtgaagacgaagatgctttgctcctcagttgtggtgatgatggtagagttcgagga
tggagatggaaagaatttgctgaatcagaagcatcacttcatttggaagagaatcatgcg
aagccattgattgaattgactaatccacaacacaaaggtccttggggtgctctttcacca
atgcctgagatcaatgccatttctgttgatcctcagtcaggaagtgtgtttacggcagct
ggtgattcttgcgcatactgttgggacgtggagagtggtaaaatcaaaatgaccttcaag
gggcattcagactatttgcatactgtagtttctcgtagctctgcaagtcagatattgacg
ggttcagaggatggcactgcaagaatctgggattgccaaaccgggaaatgcattagagta
attggttcccaggataaaaagtcccgccttcgcattagttctatggccctcgatggaagt
gaaagctggttggtttgtggacagggtaaaagtttagctttatggaatcttcctgcctca
gaatgcgtatcaacgatatccatccctgcacatgtacaggatgtgatgtttgatgaaaag
caaattttgactgtaggagcagagccacttctaaggcgttttgacttaaatggagctttg
ctttctcaaattcactgtgctccttgttcagtattttccatttccatgcatccagcaggg
gtagttgctgtgggaggttatggaggtcttgtggatgtcatctctcaatttggaagccat
ctctccacattccgtagcagctcattgtaa

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