Camelina sativa (false flax): 104748160
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Entry
104748160 CDS
T05044
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1-like
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104748160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csat03036
]
104748160
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
104748160
SWR1 complex
104748160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HSA
ResIII
DEAD
Myb_DNA-binding
Myb_DNA-bind_6
XRCC4_CC
Motif
Other DBs
NCBI-GeneID:
104748160
NCBI-ProteinID:
XP_019092213
UniProt:
A0ABM1QZM5
LinkDB
All DBs
Position
15:5523108..5532757
Genome browser
AA seq
1784 aa
AA seq
DB search
MASKGGKSKPDIVMASKSGKSKPDNEYKAKRQKTLEAPKEPRRAKTHWDHVLEEMAWLSK
DFESERKWKLAQAKKVALRASKGMLDQESREERKLKEEEQRLRKVALNISKDMKKFWMKV
EKLVLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAENLVEPYKEGHSSPPKTLPAM
ELKSDEEMAEQIPPEINCLAAGLESESPEIDEDYDLKSEDETEDDENTIEEDEKHFTKRE
RQEELEALRDEVDLPVEELLRRYTAGRVSRETSPENDESGDKLASVDQDHGEEDMNNLTA
SEETEKSPSVRRSNDSCGRLAIPKTHSHDLEPGTTTASAKSRKEDHTYDFNDEQEDVDFV
VATGEEKDDETTLSVEEELAKADNEDHVEEISLLQKESEMPIEELLARYKEDCGDKDISE
DESEYSCAQSEDSGVDSHENKQQANSDDENVDSTECKPDPNPCAEIVDGTSHEITEDNGK
DSSDKIADAAAAARSAQPTGFTYSTTKVRTKLPFLLKHSLREYQHIGLDWLVTMYEKRLN
GILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTY
FGSAKERKLKRQGWMKLNSFHVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQR
WQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQ
EKINKEVIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIASTET
QATLNSGSFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMAGIDMQLSSTICSLLLESPF
SKVDLEALGFLFTHLDFSMTSWEGDEIKAISTPSELIKQRVDLKDDPEAIPLSSKNRKNL
QGTNIFEEIRKAIFEERVKETKDRAAAIAWWNSLRCQRKPTYSTSLRTLLTIKGPLDDIH
HLKANRSSYMYSSTLADIVLSPIERFQKIIELVEAFTFAIPAARVPSPACWCSRSDSPVF
LSPSYKEKVTDLLSPLLSPIRPAIVRSQVYFPDRRLIQFDCGKLQELAMLLRKLKFGGDE
RAVITTSSQEDDTDVLDDVKQMAAAAAAAGQAISSFENQLRPIDRYAIRFLELWDPIIGD
SAMENEAGFEEKEWELDHIEKYKDEMEAEIDDGEEPLVYEKWDADFATEAYRQQVEVLAQ
HQLMEDLENEAREREAAEMAEMDLIQNETPHVPKSKKKKKAKKAKYKSLKKGSLAAEPKH
VKSIVKVEDSTDDDNDEFSYVSSSDSDMVTPLSRMHMKGKKRDLIVDTEEENTSKKKAKK
HKKSLPNSDIKYKQPSALHDELEPSKPPDSMVVDNEMKLTSRGKTIGKKSITSMPIKRVL
MIKPEKLKKGNLWSRDCVPSPDSWLPQEDAILCAMVHEYGPNWSFVSGTLYGMTAGGAYR
GRYRHPAFCCERYRELIQRHIMSASDSAVNEKNLNTGSGKALLKVTEENIRTLLNVAAEQ
PDTEMLLQKHFSCLLSSIWRTSTRTGNEQLLSLSNPIFNRQFIGSVNHSQDIARKPWQGM
KITSLSRKLLEAALQDSSTSQPNNTASRSRLQEDQPINKVELDLTLEFPPRGYDDSLTQF
PPMISVSIDGSDSLNYVNEPPGEDVLKGSRVAAENRYRNAANACIEDSLGWASNTFPAND
LKSRTGTKAQSLGKHKLSVADSAKSSKSKQRKLLAEQTEVAWVRPNDPNLKFDFTPADRE
DEEVEEKAVLEEEIEMISCSQWYDPFFTSGLDDCSLASEISEIE
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaaaggtgggaaatctaaacctgatatagtaatggcttccaaaagtgggaaa
tctaaacctgataatgagtataaagctaagcgccagaagacgctcgaagctcctaaagaa
ccacgtcgcgctaaaactcattgggaccatgttttggaagagatggcttggctttcaaag
gactttgagtccgagaggaagtggaagctggcgcaggcgaagaaggttgctttgagggct
agtaaaggcatgcttgatcaggaatctagggaagaaaggaagctaaaggaagaagagcag
cggttacgaaaagtagctcttaatatctcgaaagacatgaaaaagttttggatgaaagtt
gagaagctggtgctttacaagcatcagctggtacgcaatgagaaaaagaagaaggcgatg
gacaagcaacttgagtttctgttaggccaaaccgagaggtactcaaccatgttggcagaa
aatttagtggaaccttataaagaaggacatagtagtcctccaaaaactctgccggctatg
gagttgaaaagtgatgaggagatggcagaacagatacctccagagataaattgtttagct
gcaggtcttgaatcagaaagtcctgaaatcgatgaggattatgatctaaaatccgaggat
gagaccgaagatgatgaaaatactattgaggaggatgaaaaacactttaccaaacgggaa
agacaggaagagttggaagctttgcgagatgaagtggatctaccggttgaggagctgctc
agacgttatactgctgggagagtcagccgagaaaccagcccagaaaatgatgaaagtgga
gacaaactggcctcagtagatcaagatcatggagaggaagacatgaacaatcttactgct
tctgaagaaactgaaaagagcccaagtgttcgtcgttctaatgatagctgcggtcgtttg
gcaatacccaagacccattctcatgacctcgagccaggcacgacgactgcttctgcgaag
tccagaaaggaagatcatacttacgattttaacgatgaacaggaagatgtcgactttgtt
gttgccactggtgaggaaaaggatgatgagacaacactttctgtcgaagaggaattagcg
aaagcagataatgaagaccatgtcgaagagatttctctgctgcaaaaagagagtgaaatg
cctattgaagagctgctcgcaaggtataaggaggattgcggtgacaaggatatttctgag
gatgaatctgagtattcatgtgctcagtctgaagattctggtgtagactctcacgaaaat
aagcagcaagctaattcagatgatgaaaacgttgattcaacagaatgtaagccagatcca
aatccttgcgcagaaatagttgatggcacatcccatgaaataacagaagacaatggtaaa
gacagtagtgataaaattgctgatgcagcagcagcagcaagatctgcgcagccaactgga
tttacgtactctacaacaaaagttcgaacgaaactgccgtttctgctcaagcattctctg
cgtgagtaccaacacattggtttggactggcttgtcacgatgtatgagaaaagattgaac
gggattctagctgatgaaatgggtcttggaaagacaattatgaccattgctcttctagca
caccttgcatgtgataaggggatatggggtccccatctgattgtggttccaacaagtgtg
atgcttaattgggaaactgagtttcttaagtggtgtcctgcatttaaaatactcacctac
tttgggagtgcaaaggagcggaaactcaagagacaaggatggatgaagcttaactcattt
catgtatgcataacaacctataggctagttattcaggacagtaaaatgttcaagcgcaag
aagtggaaatacttgattcttgacgaagcccatttaattaagaattggaagtctcagaga
tggcaaacactattgaacttcaattctaaacgcagaattttgttgactggtacaccgctg
cagaatgatcttatggaattgtggtcacttatgcatttcctgatgccacatgtctttcag
tctcaccaggaattcaaagattggttctgtaacccgatagcagggatggttgagggacaa
gagaaaatcaacaaagaagttattgatcgcttacataatgtcctccgtccttttcttcta
cggcgcttaaaaagggacgtggagaagcaacttccttcaaaacatgagcatgttattttc
tgtagactgtctaagaggcagcgcaacttgtacgaggacttcatagcaagcacagaaaca
caggctacacttaacagtggaagcttttttgggatgataagtatcattatgcagttacgg
aaagtgtgtaatcatcctgatctctttgagggtcgtcctattgtaagttcttttgatatg
gctggcattgatatgcagttgagttcaacaatctgttcgctgcttttggaaagtccgttt
tccaaggttgatcttgaggctttgggattcttattcacacatcttgatttttcgatgact
tcttgggaaggggatgagattaaagctatttcaactccctcagaattaatcaagcagcgt
gtggacttgaaagatgatccagaagcaatccctttgagttcgaaaaaccgcaaaaatctg
caagggacgaatatttttgaagaaatacgtaaggccatctttgaggaaagggttaaagaa
actaaggatcgggcagcagccattgcatggtggaattctttgagatgccagagaaagccg
acttactctacatctctgagaactcttttaactattaagggtcctctcgatgatatacac
catcttaaagctaatcgttcatcttacatgtattcctcaaccctcgctgacatagttctt
tcaccgatcgagcgctttcagaagataattgagctagttgaagctttcacatttgcgatt
ccagctgcacgagtaccttcacctgcttgctggtgcagccgtagtgactctcctgttttt
cttagtccatcatacaaggaaaaagttacagatttattgtcacctcttttgtctccgatt
agacctgcaattgttcggagccaagtatattttccagataggcgactgatacagtttgat
tgtggtaagctgcaggagcttgctatgttattgaggaaattaaaatttgggggggatgag
agagctgtcatcactacttcaagccaagaagatgacactgatgtattagatgatgtcaag
caaatggctgcagcagccgctgctgctggacaagctatctcatcttttgagaatcagcta
cgtccaattgatagatatgcaattagatttttagagctttgggaccccatcattggtgat
tcggcaatggaaaatgaagcggggttcgaagagaaagaatgggaacttgaccacattgaa
aagtacaaggacgaaatggaagctgagattgatgatggggaagagcctcttgtttatgag
aaatgggatgctgattttgcaaccgaagcatacaggcagcaagtggaagtcttagctcag
catcagttgatggaagatttggaaaatgaagctagagagagggaagctgctgagatggct
gaaatggatttgatacagaatgaaactcctcatgtaccaaagtctaagaagaagaaaaaa
gcgaagaaagccaaatataaatccctgaagaaaggatcactggctgccgaaccaaaacat
gtgaagtccattgtgaaagttgaagattcgactgatgatgataatgatgaattctcctat
gtgagtagcagtgactcagatatggttacaccgctttcgcggatgcatatgaaaggcaag
aaaagagatttaattgttgacaccgaagaagagaatacttcgaagaagaaagcaaagaag
cataagaaatctcttccgaattcagatatcaaatacaaacaaccaagtgctctacatgat
gaactggaaccatcaaaaccgcctgacagtatggttgttgataatgaaatgaaactgacg
agcaggggtaaaactatagggaaaaaatccatcacttccatgccaataaagcgtgttctt
atgatcaagccagagaagctaaagaaagggaatctgtggtctagagactgtgttccctcg
cctgattcttggctgccccaggaagatgctatattgtgtgccatggttcatgaatatggg
cctaattggagttttgttagcggaactctttatggaatgacagctggtggggcttacagg
ggacggtatcgccatcctgcattttgttgtgagagatatagagagcttatccaacgacat
attatgtctgcttccgacagtgcagtgaacgagaagaacctcaacacaggttctgggaag
gcactcctgaaagtcactgaggaaaatattcggacactcttaaatgttgcagctgagcag
ccagatacagagatgctcctacaaaaacatttttcttgcttgctgtcatcaatttggagg
acgtcgacccggacagggaatgaacaactgctctccttaagcaatcccattttcaataga
cagtttattggctccgtgaatcactcccaggatatagctagaaagccttggcaggggatg
aagatcaccagcttaagtagaaagttgttagaagccgctctccaggattccagcacgagt
cagccaaacaatactgcttcccgttcgaggttgcaggaggatcaacctatcaataaagtg
gagttagacttaaccttggaattccccccacgtggttatgatgattccctgacgcagttt
ccacccatgataagtgtgtccattgatgggtcagattcattaaattatgtgaacgaaccc
ccaggggaagatgttctaaaaggttctagggttgctgcagagaaccgttacaggaatgct
gcaaatgcttgtattgaagattcacttggatgggcttcaaacacgttcccagccaatgat
ctgaagtcaagaacaggcacgaaagcacagtccctggggaaacataagctatccgtcgca
gactcagccaagtcttcaaaaagcaaacagcgcaagctcttagcagagcaaacagaagtg
gcatgggttaggccaaatgacccaaatctcaagtttgatttcacacctgcggatagggag
gatgaggaggttgaggagaaggcggttttagaagaagagatagagatgataagttgttca
cagtggtatgatccattctttacctcaggccttgatgattgctcattagcttcggaaatc
tcagaaatagagtag
DBGET
integrated database retrieval system
