Camelina sativa (false flax): 104749086
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Entry
104749086 CDS
T05044
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104749086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104749086
03009 Ribosome biogenesis [BR:
csat03009
]
104749086
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104749086
Spliceosome [BR:
csat03041
]
Complex A
U2 snRNP components
U2 related factors
104749086
Complex B
104749086
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104749086
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
90S particles
Helicases
104749086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
SRP54
T2SSE
AAA_7
AAA_30
PhoH
AAA_29
Motif
Other DBs
NCBI-GeneID:
104749086
NCBI-ProteinID:
XP_010468967
LinkDB
All DBs
Position
16:651198..657674
Genome browser
AA seq
725 aa
AA seq
DB search
MGTERKRKISLFDVMDDPSAASKNTKINGLAESGISSLVNKWNGKPYSQRYYDILEKRKT
LPVWLQKEEFLKTLNSHQTLILVGETGSGKTTQIPQFVIDAVDAETSDKRRKWLVGCTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMTDPLLER
YKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVP
GRLHPVEIFYTQEPERDYLDSAIRTVVQIHLCEPPGDILVFLTGEEEIEDACRKINKEVG
NLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLTIDGI
VYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTKTGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFIRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAFKQNNEDPNWCYENFINSRAMKSADNVRQQLVRIMSRFNL
KMCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTTRNFIRTVTDIRGEWLVDVARDYYDLSNFPNCEAKRVLEKLYKKREREKDE
SKNRK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagagagaaagaggaaaattagtttgttcgacgttatggacgatccatcggct
gcgtcaaagaacaccaaaatcaatggtcttgccgagtccggaatcagcagtctggtcaat
aagtggaacgggaagccttattcccagaggtattatgacattcttgagaaacggaagact
cttcctgtttggcttcaaaaagaagagtttctcaaaactctcaacagccatcaaaccctt
attcttgtcggtgagaccggtagtggtaaaactactcagatcccacagtttgtcatagat
gctgtggatgctgaaacttcggataagcgtcggaagtggttggttggatgcacacagcct
cgtagagttgcagcaatgtctgtgtctcgtcgtgttgctgaagagatggatgttactatc
ggagaagaagttggttacagcatccgttttgaggactgcagtagcccccgaacggtcctt
aagtacttgactgatggtatgctcctgagagaagcaatgacggatcctctccttgagaga
tacaaagtgattattctcgatgaagcccacgagagaactctagccacagatgtgctgttt
ggtcttcttaaagaagtgttgaaaaatagacctgatcttaagttagttgtgatgagtgct
actctagaagctgaaaagtttcaggagtattttagcggtgctcctctgatgaaagttcct
ggtaggcttcatccagttgagatcttctacactcaggagcctgagagggactatcttgat
tctgcgattaggactgttgtccagatccacttgtgtgagccacctggtgatattcttgtt
ttcttaactggggaggaggagattgaagatgcttgccgcaaaatcaataaagaggttggt
aatcttggggatcaggtgggacctgttaaagttgtgccactgtattctactcttccacct
gccatgcagcagaagatttttgatcctgctccagagccggtaactgaaggtggtcctcct
gggagaaagattgttgtctccactaacattgctgagacttccctaaccattgatgggatt
gtctatgtcattgaccctgggtttgctaagcagaaagtttacaacccaagaatccgtgtt
gagtcgttgttggtatccccgatttcaaaggcaagtgctcaccagagatctggtcgtgcc
ggtagaacgcggcctggaaaatgcttcaggctttatacagagaagagtttcaataatgac
ttgcaaccgcagacctatccagaaatattgagatcaaaccttgcaaacacagttctgacc
ttgaaaaaactgggtattgatgacttggtgcacttcgattttatggatccccctgctcct
gaaacgctgatgcgagccttggaagttttgaattacttgggagcactggacgatgaaggt
aacttgacaaagacaggtgagattatgagtgagttcccattggatccacagatggcaaag
atgctcatagtcagtcctgaattcaattgctcgaacgagattctctcagtttcagccatg
ctatcagtaccgaattgctttattcggcctagagaggctcaaaaagcagcagatgaagct
aaagctaggtttggacacattgatggagatcacctcacattgttgaacgtctaccacgct
tttaagcaaaacaatgaagatccaaattggtgctatgaaaacttcatcaacagtagagcg
atgaaatctgcagacaatgttagacagcagctagtccggataatgtcaaggttcaacctg
aagatgtgcagcactgattttaacagccgtgactactacatcaacataaggaaggccatg
cttgctggctatttcatgcaagtggctcacttagaacgcactgggcattacttgacagtc
aaagacaaccaagtggttcatttgcatccatcaaattgcttggatcacaaacctgagtgg
gtaatctacaacgaatatgttttgactacccggaatttcatcagaactgtgacagatatt
cgcggtgaatggctagtagatgttgctcgtgattactacgatctttctaactttcccaac
tgtgaagccaaacgtgtcctcgagaagctttataagaagagagaaagggagaaggatgag
agcaagaacaggaagtga
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