KEGG   Camelina sativa (false flax): 104749573
Entry
104749573         CDS       T05044                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
csat  Camelina sativa (false flax)
Pathway
csat04120  Ubiquitin mediated proteolysis
csat04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    104749573
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    104749573
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:csat04121]
    104749573
Enzymes [BR:csat01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     104749573
Ubiquitin system [BR:csat04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    104749573
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     104749573
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_DCAF4 zf-C3HC4_2 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 Beta-prop_TEP1_C WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_EML zf-C3HC4 WD40_like Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st zf-C3HC4_3 zf-RING_2 Beta-prop_WDR35_TULP_N zf-RING_UBOX Beta-prop_DCAF12 Beta-prop_IFT122_1st U-box zf-C3HC4_4 Beta-prop_SCAP zf-RING_5 YbfN WDR90_beta-prop_4th YpoC Beta-prop_IFT122_2nd zf-RING_6 zf-RING_10 DUF1664 Prok-RING_4 Baculo_p24
Other DBs
NCBI-GeneID: 104749573
NCBI-ProteinID: XP_010469527
LinkDB
Position
16:complement(3413634..3419688)
AA seq 679 aa
MEDISTDPLVPAVKPDPMRTSSAGGGEGANNRLEIDDGGSGGSEIGAPDLDKDLLCPICM
QVIKDAFLTACGHSFCYMCIITHLRNKSDCPCCTQHLTNNQLYPNFLLDKLLKKTSARHV
SKTASPLDQFREALQRGCDVSIKEVDSLLTLLAERKRKMEQEEAERNMQILLDFLHCLRK
QKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPHEKNH
SGFNSNSLSIRGGNLLGNYQNKKVEGKPQGSSHGLPKKDALSGSDSQSLNQSTVSMARKK
RIHAQFNDLQECYLQKRRQLVDQPNSKQENDKSVVRREGYSNGLADFQSVLTTFTRYSRL
RVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCPIVE
MSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEP
SMLVSGSDDCKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLR
NISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFV
GLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEAGSYFISAVCWKSDS
PTMLTANSQGTIKVLVLAA
NT seq 2040 nt   +upstreamnt  +downstreamnt
atggaagatatttcgacggatccgcttgttccggcggtgaaacctgacccgatgaggaca
tcttcagctggtggcggggaaggtgctaataaccgtcttgaaattgacgacggaggaagc
ggtggttctgagattggagcgccggatctggataaagacttgctatgtccgatttgtatg
caggttatcaaagatgctttcctgacggcgtgtggtcatagtttctgctatatgtgtatc
atcacgcaccttaggaacaagagtgattgtccttgttgtacccaacatctcaccaataat
cagctttaccctaatttcttactcgataagctattgaagaaaacctcagctcggcatgtg
tcaaaaactgcgtcgcccttggatcagtttcgggaagcactacaaaggggttgtgatgtg
tcaattaaggaggttgatagtcttcttacacttcttgcggaaaggaagaggaaaatggaa
caggaagaagctgagaggaacatgcagatactcttggactttttacattgtttaaggaag
caaaaagttgatgaactaaatgaggtgcaaactgatctccagtatatcaaagaggatata
aatgccgttgagagacatagaatagatttataccgagctagggacagatattctgtgaag
ttgcggatgctcggagatgatccaagcacaagaaatgcatggccacatgagaagaatcac
agtggtttcaactccaattctctgagcataagaggaggaaatttgttaggcaattatcaa
aacaaaaaggtagagggaaagccacaaggaagctctcatgggctacccaagaaggacgca
ctgagtgggtcagattcccaaagtttgaatcagtcaactgtctctatggctagaaagaaa
cggatccatgcgcagttcaatgatctacaagaatgttacctccaaaagcggcgtcagttg
gtagaccaaccaaatagtaaacaagaaaatgataagagtgtagtacggagggaaggctat
agcaacggccttgcagattttcaatctgtgttgactaccttcactcgttacagtcgtcta
agagtcatagcagaaatccggcatggggatatatttcattctgccaacattgtctcaagc
atagagtttgatcgtgatgatgagctgtttgccactgctggtgtttctagatgtataaag
gtttttgacttctcttcggttgtaaatgaaccagcagatatgcagtgtccgattgtggag
atgtcaactcggtctaaacttagttgcttgagttggaataagcatgagaaaaatcatata
gcaagcagtgattatgaaggaatagtaacggtgtgggatgtaactactaggcagagtctt
atggagtatgaagagcacgaaaaacgtgcatggagtgttgacttttcacgaacagaacca
tcaatgctcgtatctggtagtgatgattgcaaggttaaagtttggtgcacaaggcaggaa
gcaagtgtgcttaatattgatatgaaagcaaacatatgttgtgtcaagtacaatccgggc
tcaagcaactacattgcggtcggatcagctgatcatcacatccattattacgatctaaga
aacataagccaaccacttcacgtcttcagtggacacaagaaagcagtttcttatgttaaa
tttttgtccaacaacgagctcgcttctgcatccacagatagcacactgcgcttatgggat
gtcaaagacaacttgccagttcgaaccttcagaggacacactaatgagaagaactttgtg
ggtctcacagtaaatagcgagtatcttgcctgtggaagcgagacaaacgaagtatatgta
tatcacaaggagatcacgagaccggtaacttcgcacagatttggatcaccagacatggac
gatgcagaggaagaggcaggttcctactttataagtgcggtttgctggaagagtgatagt
cccacgatgctgactgcgaatagtcaaggaaccatcaaagttctggtactcgctgcgtga

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