Camelina sativa (false flax): 104749668
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Entry
104749668 CDS
T05044
Name
(RefSeq) DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03440
Homologous recombination
csat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104749668
03450 Non-homologous end-joining
104749668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csat03032
]
104749668
03400 DNA repair and recombination proteins [BR:
csat03400
]
104749668
DNA replication proteins [BR:
csat03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
104749668
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
104749668
BRCA1-C complex
104749668
NHEJ (non-homologous end-joining)
MRX complex
104749668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SbcC_Walker_B
SMC_N
Rad50_zn_hook
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
104749668
NCBI-ProteinID:
XP_010469643
LinkDB
All DBs
Position
16:complement(4033433..4041855)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVVTFFRPLTLIVGANGAGKTTIIECLKVSCTGELPPNAR
SGHRFIHDPKVAGETETKAQIKLRFKTAEGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSFRCADMDREIPALMGVSKAILENVLFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTFKLKLENLQTLKDAAYKLRESIAQDQERTESSKV
QMLELETSIQKVDAEVHNKEMMLKDLRKLQDQVSRKTAERSTLFKEQQRQYAALPEENED
TIEELKEWKSKFEERIALLETKIRKMEREMDDTQTTISSLHNAKTNYMLEISKLQTEAEA
HMLLKNERDSTIQNIFSRHNLGNVPSTSFSTEVVLNLTNRIKSRLGELEMDLLDKKKSNE
TALSTAWYCYMDANDRWKSIEAQKRAKDEIKMGISKRIEEKENERDTFEFEISSVDVKQT
DEREKQVQLELERKSKQNSERGFESQIEQKQHEIYSMEQKIKTLNRERDVMAGDAEDRVK
LSLRKTEHENLKKKHKKIIDECKDRIRGVLKGRLPPEKDMKKEIVQALRSIEREYSELSL
KSREAEKEVNMLQMKIQEVNNSLFKHNKDTESKKRYIESKLQALKQEAVTIDAYPKLLES
AKEKRDESKRKYNMAIGMREMFEPFEEVARSRHFCPCCERTFTSDEEDSFVKKQRVNASS
TVEHLKMLAVESSNADSVFQQLDKLRAIFEEYSKLTSEIIPLAEKTLQEHTEELDQKSQA
LDDVLGISAQIKADKDAIEALVQPLENTDRIFQEIVSYQKQIEDLEYKLDFRGLGVKTME
EIQSELNSLQSSKDKLHDELEKLRDDQIYMERDISFLQARWHAVREEKAKAANLSRDVTK
AEEDLERLAEEKSQLDFDVKYLTEALGPLSKEKEQLLSDYNDMKVRRNQEYEELAEKKRN
YQQEVEALRRGSSKINEYHELKKGERLNDIQEKQRLSGTQLQSCEARKNELAGELNRNKD
LMRNQDQLRRNIEDNLNYRTTKAEVEKLTREIELLEEQILNIGGIPAVEAEMVKISRERE
RLLSELNRCRGTVSVYDSSISKNRVELKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKIEEINKIIRELWQQTYRGQDMDYIRIHSDSEGAGTRSYSYKVLMQT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAGALL
RIMEDRKGQENFQLIVITHDERFAQMIGQRQHAEKYYRVAKDDMQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtcgataaaatgctgatcaagggtatcagaagcttcgacccagaaaataag
aacgtcgttacttttttcagacctttaaccctaatcgtcggtgctaacggtgccggcaaa
actacgattatagagtgcttgaaggtatcttgtacaggagagctaccaccgaacgcgagg
tctggtcacagatttattcatgaccctaaggttgctggggaaacggagacaaaagcacaa
attaagctgagattcaagacagctgaaggcaaggatgtggtttgtataaggtcatttcag
ttgacacagaaggcttcaaagatggagtacaaggcaattgagagtgtgcttcaaaccatt
aatcctcacactggagagaaagtatgtctcagcttcagatgcgctgacatggatagggag
ataccagctttgatgggtgtgtccaaagctattttagaaaacgtcctatttgtgcatcaa
gatgagtctaactggccactgcaggatccttctactttgaaaaagaagtttgatgacatt
ttctcagccaccagatatacaaaggctctggaagttattaagaaacttcacaaggatcaa
gctcaggaaataaaaacttttaaattaaagttggaaaatctgcagaccttgaaagacgca
gcttataagcttcgtgagagcattgctcaagatcaagaaaggacagagtcttctaaagtt
cagatgttggaactggaaaccagcattcagaaagtcgatgctgaagttcataataaggaa
atgatgttaaaagatctgagaaagctacaggaccaagtatcaagaaaaactgccgagagg
agcaccttgtttaaggagcagcagagacagtatgcagcattacctgaggaaaatgaagat
accattgaagaattgaaagaatggaaaagcaagtttgaagaaagaattgctcttttagag
accaaaattcgaaaaatggagagagagatggatgacacacaaactacaatttcttcgctt
cacaatgcaaaaactaactatatgctggagatcagcaagctacaaacagaagctgaagct
catatgctgctgaagaatgaaagagattctaccatccagaatattttttctcgtcacaat
ttaggaaatgttcctagtacctccttcagcactgaggttgttttgaatctcacaaatcga
ataaaatcaagactgggtgaacttgagatggacttgcttgataagaagaaatcaaatgaa
actgctctaagtacagcttggtattgctatatggatgctaatgatcgttggaaaagcatc
gaagctcagaaacgagctaaagatgaaatcaagatgggcatatcaaaacgcatagaagag
aaagaaaatgagcgtgatacatttgaatttgaaatttcctccgtggatgttaaacaaact
gatgaaagagagaaacaagtgcaacttgaacttgagagaaagagtaaacagaattctgaa
agggggtttgaatcccaaatagaacagaaacagcatgagatatacagcatggagcagaaa
attaaaacactgaatcgagaaagagacgttatggctggtgatgctgaggatagagtgaaa
ttgtctttaaggaagacggaacatgagaatcttaagaagaaacacaaaaagataatagat
gagtgcaaggatcgaattagaggggtgctgaagggtagattgccacccgagaaggacatg
aagaaggaaatagttcaagctctgaggtcaattgaaagggaatatagtgagctgagtttg
aaatcccgagaagcagaaaaggaggtcaacatgttgcagatgaagatacaagaagtaaac
aatagtctattcaaacataacaaggatacagaatctaaaaagagatacattgagtccaag
cttcaggccttaaaacaggaagcagttaccattgatgcttatcccaaattgttggagtca
gctaaggagaaaagagatgaaagtaaaagaaagtataacatggcaattggaatgcgcgag
atgtttgaaccttttgaggaggtagcacgttcacgtcatttttgtccttgctgcgagcgc
acttttacatctgacgaagaggatagctttgttaagaagcaaagggtaaatgcttcaagc
accgtggagcatcttaaaatgttagctgtggagtcttccaatgctgactctgtatttcag
cagttggacaaactgcgggcaatttttgaagagtactcgaaactaactagtgaaattatt
cctctcgctgagaaaactttgcaagagcatacagaagagctggatcaaaagtctcaagct
ctcgatgatgtattaggaatctcagcccaaataaaagctgacaaagacgcaattgaagca
ctggtgcagcccctggaaaatactgataggatctttcaggaaatcgtatcataccaaaag
caaatagaagatcttgaatataagctcgatttcaggggtcttggtgttaaaactatggaa
gaaatccaatcagaattaaatagcctccaaagcagcaaggataaattgcacgatgagctg
gagaaacttagagatgaccagatttacatggaacgtgatatatcattcctccaggccaga
tggcatgcagtaagggaggagaaggctaaagcagccaatttgtcacgcgacgttacaaag
gcagaagaagacctagagcgtttagccgaggagaaaagtcaacttgactttgacgtgaag
tatttgaccgaggcacttggcccgttgtccaaggaaaaggagcagttgctgagtgactac
aatgatatgaaggttagacgtaatcaagagtatgaagaactggctgagaaaaagagaaac
taccaacaggaagttgaggcattacgcaggggcagttctaagataaatgagtatcatgaa
ttgaagaaaggagagcgcttaaatgatattcaagagaagcagcggctgtccggaactcag
cttcagagctgtgaagctagaaagaatgaacttgcaggtgaactgaacagaaataaagac
ttgatgcggaaccaagatcaactcagaagaaatatagaggataacttgaactaccggaca
acaaaagcagaagttgagaaacttacacgtgaaattgaattattggaagagcaaatattg
aatattggtgggattcctgcagttgaagctgaaatggtaaagatatcacgggaaagggaa
agactactttcagagctgaaccggtgtcgtggaacagtgtctgtttacgacagcagtatt
tcaaaaaacagagtagagctaaaacaggcacaatacaaggacatagataagcggcacttt
gatcaactgatccagctaaagacaactgaaatggcaaataaagacttggatagatactac
aatgcccttgacaaagcactaatgcgattccacacaatgaaaatagaggaaataaataag
attataagggaactgtggcagcagacatacagaggtcaagatatggattacatacgaata
cactcagactccgaaggtgcaggcacccgctcttacagctacaaggttcttatgcagact
ggtgatacagaacttgaaatgagaggaagatgcagcgcaggtcaaaaggttcttgcttca
ttgataataaggttggctttagccgagacattttgcttaaactgtggaatattagccctt
gacgagccaactacaaacctggatgggcccaattcagaatctcttgcaggagctcttctt
aggatcatggaagacagaaagggccaagagaatttccaactcatagtcattacccatgat
gaacgcttcgctcaaatgattggccaacggcaacatgctgaaaaatattaccgtgtcgca
aaagatgatatgcaacacagcataatcgaggctcaagagatctttgattga
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