Camelina sativa (false flax): 104749958
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Entry
104749958 CDS
T05044
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104749958
03015 mRNA surveillance pathway
104749958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104749958
03041 Spliceosome [BR:
csat03041
]
104749958
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104749958
Spliceosome [BR:
csat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
104749958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
104749958
NCBI-ProteinID:
XP_010469978
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Position
16:complement(6035334..6040751)
Genome browser
AA seq
842 aa
AA seq
DB search
MSGGFFRGTSAEQDTRFSNKQAKLMKSQKFAPELENLVDVTKVKMDVMKPWIATRVTELL
GFEDEVLINFIYGLLDGKVLNGKEIQISLTGFMEKNTGKFMKELWTLLLSAQNNSSGVPQ
QFLDAREADTKKKLEAAMQKANHEHDSLRKIDSSVDLKGKNGMEKKPSRDLPEDGRRADE
KNGVKETRRDLISPRRREASRSPLRGSRSRSISKTNSGSRSYSGERKSRSLSRSSDASIS
PRKRRLSNSRRRSRSRSLRRSLSPRRRRIHSAYGSRSGSPIRRHRRSTPERRCQSPPPSR
QRRSPSPFRRRRSPSPPARRRRSPSPPARRRRSPSPPARSRRSPSPPARSRRSPSPPGRH
RRSPLPFRRRRSPSPPARRHRSPSPLYRRNRSRSPLAKRGRSDSQGRSPSPVARRMTPTG
ARLPTPPAGQKLPSPPPRRAGLPSPMRFGGSHAANHLESPSPKSLSPPGEKKVVPSPPVR
RRSSLTPAKERGSLSPAGRGEGESPSHVKHNGSMTPVGSRGRSSPSSHVKARSPVWRRSP
TPVDRRSRRFPSADRRRRRSPSSSRSPSRSFSPPVRRRSPSPSRRRQQRDRRSPGHPSEE
QDREDGIQSSKLLKRTAVQLPDIDKRKQLPEKVPEVRRAEHVREQERKSSDKIPERRSSR
THGSEMPPVSPKESLRVENSEGKSQPLSNKVKGSDQVEKEDNSDLDANLSSDSKENIRHH
TKDRKRRKEKRSSREEVSSDDKGSSDSDLEDRKEAKRRRKEEKKTRKEEKKRKREERRRK
REERRGGKLKHKNQEHSDTSEGDEAETYPKNKKGESDPKRLEIELRNKALESLKAKKAKL
DK
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggatttttccggggtacttccgccgagcaggatactcggttctctaacaag
caagccaaattgatgaagagtcagaaatttgccccggagttggagaatctggtggatgtg
accaaagtgaagatggatgttatgaagccttggattgcgactagagtcactgagcttctt
ggtttcgaagatgaagttctcatcaactttatttatggtctgcttgatgggaaggtactg
aatggtaaggagattcagatatcgctaactggattcatggagaagaatactggcaagttt
atgaaagaactctggacgcttcttctaagcgcacagaataattcaagtggtgttccacag
cagtttttagatgctagagaagctgacacaaagaagaaactggaagcagcaatgcaaaaa
gcaaaccacgagcatgattcattgaggaaaatagacagcagcgttgatctcaaggggaaa
aatgggatggagaaaaaaccttcaagagatcttccggaggatgggagaagggctgacgag
aagaatggtgtaaaagaaacgagaagggacctgatatctccacgtcgcagagaagcatcc
cgctcaccccttagagggtcacgttctaggtctatcagcaaaacaaattcaggctctaga
agttattctggtgaacggaaatccaggagcttatcacgatcatcagatgcctccatctca
cccagaaagcggagattgtcgaattcaaggcgtagatccagatcacgttccttgcgtagg
tctctgtctcctcggcgacgtaggatacattctgcttatggaagcaggtctgggtcacca
attagacgtcacaggcgatctacgcctgagagacgctgccagtcaccacccccttcaagg
cagcgcaggtctccatcaccctttaggcgacgcaggtcaccatctccgcctgcaaggaga
cgcaggtcaccatccccgcctgcaaggagacgcagatcaccatcaccacctgctaggtca
cgcaggtcaccttcaccacctgctaggtcacgcaggtcaccgtcaccgcctggtagacat
cgccgatctcctctgccctttagaaggcgtaggtctccttcaccaccagctagaaggcac
aggtctccgtctccactctataggcgcaacaggtcgcgatcaccactggctaagcgagga
aggtctgactcacaggggaggtctccctcaccggtggctaggcgcatgacacctactggg
gcaagattgcctacaccaccggctgggcaaaaattgccttcaccacctcctaggcgtgca
ggattaccttcgccgatgaggtttggaggatctcatgcagccaaccacctggaatcacca
tcacccaagtcactgtcccctcccggtgagaaaaaagtggtaccatctccacctgttaga
cgacgtagttcactgactcctgccaaagagcgaggctccttgtccccagctggacgcggt
gaaggagaatccccttcacatgtcaagcataatggatctatgacacctgttggaagtcga
ggtagatcttctccttcatctcatgtcaaagcacgctctcctgtctggcgcaggtcacca
acacctgtcgaccggcgtagtcgaagatttccatctgctgacagacgtaggagacggtct
ccatcctcgagtagatctccttctaggtcgttctcacctcctgttcgccgtagatctcct
tctccaagtagaagaaggcaacagagggacagaagatctcctggacatccatctgaagag
caagatagagaggacgggattcaaagttccaagctattaaagagaactgcagtgcagttg
cctgatattgataagaggaaacaattaccggaaaaggtgccagaagttaggcgtgcagaa
catgtgagggagcaagagagaaagagcagtgataagataccagagaggcgttccagtaga
acccatggttcagagatgcccccagtttcacctaaggaatcgcttagagtagaaaattca
gaaggaaagagtcagcctctttctaataaggtgaagggcagtgatcaggttgagaaagag
gataacagcgacttggatgcaaacctttcctctgattctaaggaaaatatcagacatcat
actaaggatagaaagagaagaaaggagaaaaggtcttcaagggaagaagtatcctcagat
gataagggcagttctgattctgacctggaagataggaaggaggctaaaaggaggaggaag
gaagaaaagaaaacgagaaaggaggagaagaaacgcaagcgagaggagagacgtcgtaaa
agggaagaacgtcgtggtgggaagctgaaacataagaatcaagagcattctgatacttca
gagggcgatgaagctgagacctatcctaagaataaaaaaggggagtcagatccaaagagg
cttgagattgagttgcgaaacaaagcactcgagtcactgaaagcaaagaaggcaaaattg
gacaagtga
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