Camelina sativa (false flax): 104750141
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Entry
104750141 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104750141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104750141
03041 Spliceosome [BR:
csat03041
]
104750141
03009 Ribosome biogenesis [BR:
csat03009
]
104750141
03016 Transfer RNA biogenesis [BR:
csat03016
]
104750141
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104750141
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104750141
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104750141
Complex C
U4/U6.U5 tri-SnRNP related factors
104750141
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
Pre-60S particles
Helicases
104750141
Transfer RNA biogenesis [BR:
csat03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104750141
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
104750141
NCBI-ProteinID:
XP_010470196
UniProt:
A0ABM0WF53
LinkDB
All DBs
Position
16:8031363..8037192
Genome browser
AA seq
985 aa
AA seq
DB search
MGSVKRKSPEESSDCAPQQKVQREDDSTQIINEELVGCVHDVSFPENYVPLAPSVDNKPP
AKEFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIYTSPIK
ALSNQKYRDFKEEFADVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREVAWIIFD
EVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYR
PTPLQHYVFPAGGNGLYLVVDEKAKFHEDSFQKSLNALVPTNEGDKNGKSHKGLVIGKFG
EESDIFKLVKMIIQRQYDPVILFSFSKKECETLATQMSKMDLNNDDEKDAVETIFTSAID
MLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGL
NMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKMEPAVAK
SMLKGSADSLNSAFHLSYNMLLNQLRCEEGDPENLLRNSFFQFQADRAIPDLEKQIKSLE
EERNSMVIEEEESLKNFYNLILQYKSLKKDICEIVFTPKYCLPFLLPNRAVCLDCTNDDE
APQSFSIEDQDTWGVIMKFNKVKSLSEDDDNKRPEDANYTVDVLTRCMVSKDGVGKKKVK
AVPIKERGEPVVVTVPLSQIKSLSSAIMNIPKDLVPLEARENALKKVSELLSRHPDGIPL
DPEVDMKIKSSSYKKTVRRLEALENLFEKHKIAKSPLLTEKLKVLHMKEELTAKIKSLKK
TVRSSTTLAFKDELKARKRVLRRLGYTNSDNVVELKGKVACEISSAEELTLTELMFSGVF
KDAKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAELQLDCKVEIDVES
FVQSFRPDIMEAVYAWAKGSKFFEVMKIVRVFEGSLIRAIRRMEEVLQQLIVAAKSIGET
QLEAKLEEAVSKIKRDIVFAASLYL
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgggttcggttaagagaaaatcaccggaggaatcctctgattgcgctccgcagcagaag
gttcaaagagaagacgattcaacccaaatcatcaacgaagagctagttggttgcgttcac
gatgtttctttccctgaaaattatgttcctcttgctccctccgttgacaataaaccaccg
gctaaagagttcccctttacccttgactccttccaatctgaagctatcaagtgtctcgat
aatggcgagtcagtcatggtttcagctcatacatctgctggtaaaactgttgtggcatcc
tatgctattgccatgtctttgaaggaaaaccagagggttatctacacttctcctataaag
gcacttagtaatcagaagtacagagattttaaagaggagtttgctgatgttggtttgatg
actggggatgttacaattgatcctaatgcctcttgccttgtcatgaccacggagattttg
cgtagcatgcagtacaaagggtcagagattatgcgggaggttgcctggattatttttgat
gaggtgcattacatgcgagatagtgaaagaggtgtggtttgggaagaaagtattgtaatg
gctccgaagaattctcgttttgtgtttctttctgcaactgttcccaatgccaaggagttt
gcggattgggttgctaaggttcaccaacaaccatgccacattgtttacactgattatcgg
ccaactccacttcagcactatgtctttcctgctggaggtaatggactttacttggttgtg
gacgagaaggctaaatttcatgaggatagcttccagaaatctcttaacgcactggttccg
actaatgagggtgacaagaatggaaagtctcataagggattagtgattggaaaatttggt
gaagaaagtgacattttcaaattggtgaaaatgataattcagcggcaatatgatcccgtg
attttgttcagtttcagcaaaaaggaatgtgagacacttgctacgcagatgtctaagatg
gatttaaacaacgatgatgagaaagacgctgtggagactatctttactagcgcaattgat
atgctttcagatgatgataagaagctacctcaggtgtcaaatatcttacccatcttaaaa
cgaggtataggcgttcatcactcgggactgcttccaattttgaaagaagtaattgagata
ttgtttcaagaaggtcttattaagtgtttgtttgctacagagacatttagtattggattg
aacatgccggcaaagacagttgtttttacaaatgtacgtaagtttgatggagacaagttc
cggtggttatcaagtggagaatatatacagatgagtggtcgtgctggacgtcgaggtatt
gacaaacgaggtatctgtatcctcatggttgatgagaagatggaacccgctgttgccaaa
tcaatgctcaaaggaagtgctgattctttgaacagtgccttccatttgagctataacatg
cttctaaatcagttgcgatgtgaagaaggtgatcctgagaatcttctccgcaattcgttc
tttcagtttcaagctgaccgtgctatacctgatctcgagaaacaaataaaatccctggaa
gaagagagaaactctatggtgattgaagaagaagaaagtttaaaaaatttctataacctc
attttgcaatataagagtctgaagaaggatatatgtgaaattgtgttcaccccaaagtac
tgcttaccctttttgctgccaaacagagcagtttgtctcgattgtacaaatgatgatgaa
gcgccacaatcattcagcattgaagatcaggatacctggggagtaataatgaaattcaac
aaagtcaaaagcttatctgaagatgatgataataaaagaccagaggatgcaaactacacc
gtagatgtattaactagatgtatggttagcaaagatggcgttggcaaaaagaaagttaag
gctgtgccaattaaggaacgtggtgagcctgttgtggtcactgttcctttatctcagatt
aagagtttaagcagtgcaatcatgaatataccaaaagatcttgtaccactggaagctcga
gagaatgctctgaagaaggtttctgagttactctctagacatcccgatggaataccccta
gatcctgaagttgatatgaagattaagagcagctcttacaaaaagacagttcgtcgcctg
gaggccctggaaaacctatttgaaaaacacaaaatcgcgaaatctccgctcttaacagaa
aagctgaaagttctacacatgaaggaagagctaacagccaagatcaagtcacttaagaaa
actgtccgatcatcaacaacattggcgtttaaagatgaactcaaggccagaaagcgtgtt
ttacgaaggctaggatacaccaatagtgataatgtcgtggagttgaaggggaaggttgca
tgtgaaatcagtagtgcagaagaattgacattaacggagctaatgttcagtggtgtcttc
aaggatgcaaaggtggaggagttggtttctctcctctcttgctttgtgtggcgagagaga
ctccctgacgccgctaaacccagagaagaactcgacttgctcttcatacagttacaagac
acagctaggcgtgttgctgaacttcagcttgactgcaaggtcgaaattgatgtggagagt
tttgtgcaatcattcagaccggatataatggaggcggtgtatgcttgggcaaaagggtct
aaattctttgaggtcatgaagattgttcgtgttttcgaagggagcttgatcagagcgata
aggagaatggaggaagttctgcaacagctcatagtagctgcaaaatctataggagaaaca
cagcttgaagctaaactagaagaagctgtttctaagatcaaaagagacattgtatttgct
gcatctctctacttgtga
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