Camelina sativa (false flax): 104750430
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Entry
104750430 CDS
T05044
Name
(RefSeq) polyadenylation and cleavage factor homolog 1-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104750430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104750430
03019 Messenger RNA biogenesis [BR:
csat03019
]
104750430
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104750430
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104750430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
Pcf11_C
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
104750430
NCBI-ProteinID:
XP_010470525
LinkDB
All DBs
Position
16:complement(12918752..12920288)
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AA seq
348 aa
AA seq
DB search
MSRVSSSQSYNNYGVDVIASNSSFPLRNNVSSNTNNYQKPFVGFGNNPNPQIVPVPLPYR
KLNDDVALDSLPEWVPIHHQSVSRTLTPNYPVPTTNFVPDTTVQAPVFTNYSNMASVVSQ
SMSQPIVLSNELIALLSVLNNENEKEKPTSEASKPGELPLGLSFDNPSSLNVRHESVIKS
LYSDMPRQCLSCGVRFKCQEEHSKHMDWHVRKNRTAKPVGRQGQQPKKSRGWLASASLWL
SAATGGGMEQAAKPSFGGETQKKKEEQKQLVVPADENQKNCALCEEPFEEFFSHEDDDWM
YKDAVYYNKNGRIVHAKCMPEPRPAKESRELPRVMSVTVPSVASAIVC
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgtctagggtttcttcatctcaatcatataacaattacggtgttgatgtgattgcttct
aattcaagtttcccattacgtaacaatgtttcttctaacaccaacaattatcagaaaccc
tttgttggttttggtaataaccctaacccccaaattgttccggttccattaccgtatcgt
aagcttaacgatgatgtcgctttagattcgttgcccgaatgggttcctattcatcatcaa
tctgtctcaagaaccctaactccaaattatcctgttccaactacgaattttgtgccagac
acaactgttcaagcacctgtttttacgaattattctaacatggcttcagttgtgtcacaa
tctatgtctcaaccaattgttttgagcaatgaattgatagcgttgcttagtgttcttaac
aatgagaatgagaaagagaagccaacttcagaagcaagtaaacccggtgaattgcctctt
gggttaagctttgataacccatcatcactcaatgtgcgacacgaatctgtgattaagtct
ttgtattctgatatgccgaggcaatgtttatcgtgcggggttagattcaagtgtcaagaa
gagcatagcaagcatatggattggcatgtgaggaaaaacaggacggctaaacccgttggg
agacagggtcaacaaccgaagaagtcgcggggttggttagcgagtgcttccttgtggctc
agtgcagcaactggaggagggatggaacaagcggcgaaaccatcttttggaggagaaacg
cagaagaagaaggaagagcaaaagcaactcgtagtgcctgcggatgaaaaccagaagaat
tgcgcgttgtgtgaagagccgtttgaagagttctttagccatgaagatgatgattggatg
tacaaagacgcagtgtactacaacaagaatggtcgtatagttcatgcaaagtgtatgcct
gaaccccgacctgcaaaggaatcgagagagctgccgagggtaatgtctgttacagttcca
tcggttgcgagtgcaatagtctgttga
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