Camelina sativa (false flax): 104752526
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Entry
104752526 CDS
T05044
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104752526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104752526
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104752526
Complex C
U5 SnRNP specific factors
104752526
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
104752526
NCBI-ProteinID:
XP_010472990
LinkDB
All DBs
Position
16:complement(25884389..25894337)
Genome browser
AA seq
2361 aa
AA seq
DB search
MWNNNDGMPLAPPGTGGSMMPPPPAAHPSYTTLPPPSNPTPPVEPTPEEAEAKLEEKARK
WMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVP
HAVFKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYMAQWGTMWIMMRREKR
DRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVHTWFYDHKPLVKT
KLINGPSYRRWNLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMPSFFTAKALNMCIPGGP
KFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHSPMV
MYIKTEDPDLPAFYYDPLIHPISNTNKEKRERKVYDDDDEDDFPLPEGVEPLLKDTQLYT
DTTAAGISLLFAPRPFNMRSGRTRRAEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKCYV
LNELHHRPPKAQKKKHLFRSLAATKFFQSTELDWVEVGLQVCRQGYNMLNLLIHRKNLNY
LHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLA
DGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWR
VWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLD
AMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAH
YNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEALAIYTTTVH
WLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREELGLIEQAYDNPH
EALSRIKRHLLTQRGFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHL
FPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEKIDLTMLNR
LLRLVLDHNIADYVSAKNNVVLSYKDMSHTNLYGLIRGLQFASFVVQFYGLLLDLLLLGL
TRASEIAGPPQMPNEFMTFWDTKVETRHPIRLYSRYIDKVHIMFKFTHEEARDLIQRYLT
EHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFV
SVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAVAFLRVDD
EHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENK
IQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFR
SGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDR
GIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDV
IQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRF
TLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLC
QVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHKWPMSKPSLVAESKDMFDQ
KASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSA
FGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSN
QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLG
QLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQ
ACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLL
KPDKSVVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGA
EITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQSAFGSKTDWR
VRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICVADLRTQIAGYLYGISPP
DNPQVKEIRCVVMVPQFGSHQHVILPSSLPEHDFLNDLEPLGWLHTQPNELPQLSPQDVT
SHSRILENNKQWDGEKCIILTCSFTPGSCSLTSYKLTQTGYEWGRLNKDTGSNPHGYLPT
HYEKVQMLLSDRFLGFYMVPENGPWNYNFMGVKHTVSMKYSVKLGSPKEFYHEEHRPTHF
LEFSNMEEADILEGDREDTFT
NT seq
7086 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacaacgatggtatgcccttagctcctcctggtaccggcggctcgatgatg
ccgccacctcccgctgcgcatccttcttacacgacgcttccgccgccttctaatccgact
cccccggtggagcctactcctgaggaggccgaagcgaagcttgaggagaaggccagaaaa
tggatgcagcttaactccaagcgctacggcgacaagaggaagtttggattcgtggaaact
cagaaggaggacatgccacctgagcacgtcaggaagatcatcagggatcatggtgatatg
tcatccaagaaattccgtcacgacaaacgtgtataccttggagcccttaagttcgttcct
cacgctgttttcaagctcttggagaatatgcctatgccctgggagcaggttcgagacgtg
aaggttttgtaccacatcactggagctattacttttgtgaacgagataccatgggtcgtg
gaacctatttacatggctcagtggggtactatgtggattatgatgcgaagggaaaagagg
gatcgtcgtcatttcaagagaatgcggtttccaccatttgatgatgaggagcctccacta
gactatgcagacaacttgttggacgttgatcctcttgaaccaattcagttggagcttgat
gaggaagaagattctgctgtacacacttggttttacgaccacaagccactcgttaaaaca
aaactgattaatggtcccagttaccggaggtggaacctctcacttccaattatggctacc
cttcacaggcttgcaggccagttgctttctgatctgattgatcgcaactacttctacttg
tttgacatgccatctttcttcacagcaaaggctttgaacatgtgcatacctggtggacct
aagtttgaacctttgtaccgtgatatggaaaaaggagatgaggactggaatgagtttaat
gacatcaacaagcttatcattcgttcccctctgcgaactgagtacagaatagcgtttccc
catctctacaataatcggccaaggaaagtaaaactctgtgtgtatcacagtcctatggtt
atgtatataaagaccgaggatcctgatcttcctgcattttattatgatccgttaattcac
ccgataagcaacactaacaaggaaaagcgtgaaaggaaggtgtatgatgacgatgatgag
gatgacttccctttaccagaaggtgtggaacctttgctaaaagatacccaactctacact
gacactacagctgctggcatatcattgttgtttgccccacgacctttcaatatgaggtct
gggaggacgcgccgggcagaagatattcccttggtgtcagagtggttcaaggagcattgt
cctccagcctatcctgttaaagttcgggttagttaccagaagctattgaaatgctatgtg
ctgaatgagttgcaccatagaccacctaaagctcagaagaagaagcacttgtttcgatct
cttgcagctacgaagtttttccaaagtaccgaactggattgggttgaagtgggtctgcaa
gtctgtcgtcagggttataatatgctgaatctactgattcataggaagaatttaaactac
ctgcatcttgactacaacttcaacctaaagcctgtgaaaactttgaccaccaaagagcgt
aaaaagtcacgttttgggaacgctttccatctctgccgtgagattctccgactgacaaaa
cttgtagttgatgcgaatgtccaattccgacttggtaatgttgatgccttccaattggct
gacggtctgcaatatattttctctcacgttggccagttgacgggtatgtatcgttataaa
tacagactgatgaggcagattaggatgtgcaaggatttgaagcacttgatatattaccgt
ttcaatactggtcctgtgggtaagggtccagggtgtggattttgggctccaatgtggagg
gtatggttgtttttccttcggggaatagttcctcttcttgaacgatggttagggaatctt
cttgcacgtcaatttgaggggcgtcattcaaaaggagtggccaaaacagtcacaaaacag
agagttgaaagccattttgatttggagcttcgagctgctgtcatgcatgacgtccttgat
gccatgccagagggtatcaagcaaaataaagcccggaccatattgcagcaccttagtgag
gcatggcggtgctggaaagctaatattccatggaaggtccctgggttacctgttccaatt
gagaatatgatcctccgttatgtcaagtctaaggctgattggtggacgaatgttgctcac
tacaatcgtgagcgtatccgaaggggggctactgttgataagacagtttgtagaaagaat
ctcgggaggttgactcgtctgtggcttaaggcagaacaggaacgacagcacaattacctg
aaagatggtccgtatgtcactccggaagaagcacttgcaatctatacaacaactgttcat
tggctggaatcaaggaagttttctccaattccatttcctccattgtcatacaaacatgac
acaaagttgctcatccttgcccttgagagactgaaggaatcatatagtgtagctgtgagg
ttgaaccagcagcagcgagaagagcttggtctaattgaacaagcttatgacaatcctcat
gaagctctatcacgaataaaacgtcatcttctcacccaacgtggctttaaagaggttggc
atagagtttatggatctatatagctacttgattccagtttatgaaatagagcctctagag
aaaattaccgatgcctatcttgatcaatacttgtggtacgaaggtgacaagcgccacttg
tttccaaactggattaagccagcagactcagagccgcccccacttctggtttataagtgg
tgtcaaggtatcaacaatttgcaaggcatatgggacacaggtgatgggcagtgtgtggtg
atgctccaaactaagttcgaaaagttttttgagaagatcgatttgacaatgttgaacagg
cttcttcgtttggttcttgaccacaatattgcagactatgtgtctgccaagaataacgtg
gtcctgtcttacaaggatatgagtcatactaacttgtatggtctcattaggggactccag
tttgcatcatttgttgttcagttctatggtctattacttgatcttttgcttcttggtttg
actcgagcgagtgaaattgctgggccaccacagatgcctaacgagtttatgacgttttgg
gatacaaaagtggaaacacgccatcccataagactctattctcggtatatagacaaagtt
catatcatgtttaagtttacccatgaagaggctcgggatcttattcagcgatatcttacg
gagcacccggatcccaataatgaaaacatggtgggatacaacaataagaagtgctggcca
agagatgcaaggatgaggttgatgaaacatgatgtcaatcttggtagaagtgtcttctgg
gacatgaagaaccgtcttcctcggagcatcacaactttggagtgggagaatggctttgtt
tctgtctatagcaaggataatcctaacctgctctttagcatgtgtggatttgaagtccgc
atacttccaaaaatcaggatgacccaagaagctttcagcaacacaaaagatggtgtctgg
aatctgcaaaatgaacagaccaaggagaggactgcagtagcttttctgcgggttgacgat
gaacatatgaaggtgtttgagaatcgtgtgaggcagatccttatgtcatcaggatcaacc
acctttaccaagatcgtcaacaaatggaatacagctctaattggcctcatgacttacttc
cgtgaagccactgtacacacacaagagctcttggatctactggtcaagtgtgagaataaa
atccaaacaagaataaagatcgggttgaactcaaagatgcctagtcgatttcctcctgtt
atcttctacactccaaaggaaattggtggcctgggaatgttgtcaatgggtcatattttg
atcccacaaagtgaccttcggtacagcaagcagacagatgttggtgtaacccactttagg
agtggaatgagccacgaggaagatcagcttataccaaatctttaccgttatatacagcca
tgggaaagtgagtttattgattcacagcgggtatgggcagaatatgctttaaaaaggcag
gaagcgcaggcccagaataggcgtcttacactggaagatctggaagattcttgggatagg
ggaattcctcgtataaatacactgtttcagaaggataggcacacattggcatatgataaa
ggttggagagttcggaccgactttaagcagtaccaagtcctaaaacaaaatcctttctgg
tggacacaccagaggcatgatggaaagctgtggaacttgaacaattaccggactgatgtc
attcaagcacttggaggtgttgagggtattcttgagcacacgttattcaaggggacatac
ttcccgacatgggagggtcttttctgggagaaggcatctggttttgaggagtcgatgaaa
tataagaagttgactaatgcgcagaggtctggtctaaaccagattccaaatagaagattc
acgctttggtggtcgccaacaattaatcgagcgaatgtctatgtgggtttccaagtgcag
ttggatctgacaggaatatttatgcatggaaagattcctacacttaagatatctttgatt
cagattttccgtgcccatttgtggcagaaaatccatgagagtgttgttatggatctttgc
caagtattggaccaagagttggacgctttggagatagaaacggtacagaaggagacaatt
catccaagaaagagttataagatgaacagctcttgtgctgatgttcttctatttgctgct
cataaatggcctatgtctaagcctagcctggttgcggagtcaaaggatatgttcgaccag
aaagctagtaacaagtattggatagatgtgcaacttcgatggggagactatgactcccat
gatattgagcgttatacgagggcaaaattcatggactatacaactgacaacatgtctatc
tatccatctccaacaggtgtaatgattgggcttgatctggcatacaacttgcattctgcc
tttggtaattggttccctggttcaaaacctcttcttgctcaagcaatgaacaagatcatg
aagtcaaatccagctctgtatgtattgagagagaggatcaggaagggtttacagttgtac
tcgtctgagcctacagagccatatttgtcatctcaaaactatggtgaaatattcagcaat
caaattatatggtttgttgatgataccaatgtatatcgtgtcacgattcacaagacattt
gaaggaaatttaacgactaagccaatcaatggtgcgattttcattttcaatccaagaact
gggcagctgttcctgaaggttatccatactagcgtctgggctggtcagaagcgtcttggt
cagctagcaaaatggaaaactgctgaagaggttgctgcacttgtgcgatcactccccgtt
gaagaacagccaaaacagattattgtcacgcgaaaaggaatgttggatccccttgaggtt
cacttgctggatttccccaacatcgttatcaagggaagtgagctgcagcttccgttccag
gcttgcctaaagatagagaaatttggtgacctgattttgaaggcgacagaaccgcagatg
gttttgtttaatatatatgatgattggttgaagagtatatcttcgtatactgccttttca
agacttattttgatccttcgtgcgcttcatgttaataatgagaaggctaagatgttgttg
aagcctgacaagtctgttgtcactgagccacatcacatctggccctctctcactgatgat
caatggatgaaggtggaggtagcactcagagatctgatcctttctgactacgcaaagaag
aacaatgttaacacctcagctctgacacaatcagagatcagagatattattcttggagct
gagattactccaccctctcaacagaggcaacagattgctgagattgagaaacaggcaaag
gaagccagccagcttactgcagtcacaacaagaactacaaatgttcatggtgatgagctc
attgtcaccaccacgagcccttacgagcaatctgcattcggttccaaaacagattggcgt
gtacgtgcaatatcagccactaacctttacctcagagtcaatcacatatatgtgaattca
gatgacataaaggaaaccggatacacctacatcatgccaaagaatattttgaagaagttc
atatgcgtagcggatcttcgtactcaaattgctgggtatttgtatggtattagtccccca
gataatccccaagtgaaagaaatccgttgcgttgtgatggtgccacagtttggatctcat
cagcatgttatcctgccgtcttctcttcctgagcatgacttccttaatgatctggagccc
ttgggatggttgcacacacagcctaacgagctgcctcagctgtcaccacaggatgtaacc
tctcattcgcgtattctggagaacaacaagcaatgggatggagaaaaatgcatcatcttg
acctgcagtttcactccgggctcctgctctttgacgtcatataagttgacccaaaccgga
tatgaatgggggcggcttaataaggacacaggcagcaatcctcacggttaccttcccacc
cattatgaaaaggttcagatgttattgagtgaccgattcctcgggttttacatggttcct
gagaatggaccgtggaactacaacttcatgggagtgaagcacacggtgagcatgaaatac
agtgtcaaactcgggtccccaaaggagttctatcacgaggagcatcgacccactcatttc
ttggagtttagtaacatggaggaggccgacattttggagggagatcgtgaggacacattt
acttga
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integrated database retrieval system
