Camelina sativa (false flax): 104754440
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Entry
104754440 CDS
T05044
Name
(RefSeq) DNA repair helicase XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03022
Basal transcription factors
csat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104754440
09124 Replication and repair
03420 Nucleotide excision repair
104754440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104754440
03036 Chromosome and associated proteins [BR:
csat03036
]
104754440
03400 DNA repair and recombination proteins [BR:
csat03400
]
104754440
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104754440
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104754440
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
104754440
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104754440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SNF2-rel_dom
NAMPT_N
AAA_11
Motif
Other DBs
NCBI-GeneID:
104754440
NCBI-ProteinID:
XP_010474939
LinkDB
All DBs
Position
17:1030569..1035805
Genome browser
AA seq
758 aa
AA seq
DB search
MIFKIEDVTVYFPYDNIYPEQYEYMVELKRTLDAKGHCLLEMPTGTGKTIALLSLITSYR
LSRPDSPIKLVYCTRTVHEMEKTLAELKVLHDYQVLHLGTQAKILAIGLSSRKNLCVNTK
VLAAENRDSVDAACRKRTASWVRALSTEKPNIELCDYFENYEKAAENALLPPGVYTLEDL
RAFGKNRGWCPYFLARHMVQFANVIVYSYQYLLDPKVAGIISKELQKESVVVFDEAHNID
NVCIEALSVSVRRVTLEGANRNLNKINHEIDRFKANDAGRLLAEYNRLVEGLALRGDLSG
GDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS
LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP
YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLSFTPVVSRS
FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV
SYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREF
LRKMAQPYDKTGTMGRKTLLTQEDLEKMAETAVQDMAY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcaagatcgaagacgtaactgtctacttcccttatgacaacatatacccagaa
caatacgaatacatggttgaattgaagcgaaccctagacgccaaaggacattgtcttctc
gagatgcctaccggaactggtaaaaccattgcccttctctcccttatcaccagttatcga
ctctctcgtcctgattctccgatcaagcttgtttactgcactcgtactgtccacgagatg
gagaagacgttagctgagcttaaggtactccatgactaccaagtactccatctcggcacc
caggctaagattctcgccattggtctttcctctcggaagaatctttgcgttaatacaaag
gttttagcagcggagaatcgtgattctgttgatgcggcgtgtaggaaacggactgctagt
tgggttagggctttgtctactgagaagccaaatatagaactctgtgattactttgagaac
tacgaaaaggctgctgaaaatgcgctgttacctcctggtgtttatactttagaggattta
cgggcgtttggcaagaatcgtggatggtgcccttactttctcgcgaggcatatggttcag
ttcgccaacgttattgtttatagctaccagtacttactggatcctaaggttgctggaatt
atatcgaaggagttacaaaaggagtcagttgtagtgtttgacgaggcccataatatcgat
aatgtgtgtattgaagcactcagcgtcagtgtgaggagggtcacacttgaaggagctaat
cgaaatcttaataagataaaccacgaaattgataggttcaaggctaatgatgcaggaaga
ttgctagctgaatataaccgactggttgagggtttagcactgagaggggacttatctgga
ggtgatcaatggcttgcaaaccctgcactgccccatgatattctcaaggaggctgtcccg
gggaatatcagacgggctgagcattttgtgcatgttttacgccgattacttcagtacttg
ggggtacggctggacactgagaacgtagagaaagaaagccctgttagctttgtatcgtcg
ctgaattctcaggctggaattgagcagaaaacactgaagttctgttatgaccggctccag
tctctcatgctaacccttgaaattacagacacagatgagtttttgccaatccagacagtg
tgcgattttgcaactcttgttgggacatatgctcggggattttccatcataattgagcct
tatgacgagagaatgcctcatattccagatcctatattgcagttgagctgtcatgatgcg
tctctggcgatcaaaccagtgtttgatcgtttccaatcagtcgtaattacatcaggcacc
ttgagcccaattgatctttatccccgtcttcttagtttcactcctgttgttagtcgaagc
tttaagatgtcaatgacacgagactgcatctgccctatggttctaactcggggaagtgat
cagcttcctgttagcaccaaatttgacatgagaagtgatcctggtgttgtgaggaattac
ggaaagcttttggtagagatggtatctattgttcctgatggagttgtctgcttctttgtt
agttactcatacatggatggcattattgctacatggaatgaaactggaattctgaaggaa
ataatgcaacagaagcttgttttcatcgaaacacaagatgttgtagaaacaacattggca
ctggataattatcgcagggcttgcgattgcggaagaggtgcagttttcttctccgtggct
agggggaaagttgctgaaggtatcgattttgatcgtcattatggaagactggttgtaatg
tacggagtgcctttccagtatacgttaagcaagatattactagcaagattggagtatctg
cgtgatacatttcagataaaagaaggcgatttcctaacttttgatgcattgaggcaagca
gctcaatgtgtagggcgagtaatccggtcaaaggctgattatgggatgatgatatttgca
gacaaaagatatagccgtcatgataagcggtccaaactacccggttggatactttcacat
ctgcgggatgcacacttgaatctaagcacagacatggctattcacattgctcgagagttt
ctaaggaaaatggctcaaccgtatgataagacgggtacaatgggaaggaaaactctgttg
acacaagaagatttggagaagatggctgagactgctgtgcaagacatggcttattag
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integrated database retrieval system
