Camelina sativa (false flax): 104754533
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Entry
104754533 CDS
T05044
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104754533
Spliceosome [BR:
csat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
104754533
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
UTP6_C
TPR_12
TPR_MalT
TPR_16
TPR_10
Motif
Other DBs
NCBI-GeneID:
104754533
NCBI-ProteinID:
XP_010475046
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All DBs
Position
17:1419723..1424800
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AA seq
766 aa
AA seq
DB search
MGDSEAMVAEGYTSASYGDYNASATTVESTGKETAPNVDPSHSVNGTAHGVGLTAPAENG
VVTDNVAVTAPASELGDNPGSALSPEEERLWNIVKANSLEFNAWTALIDETERIAQDNIA
KIRKVYDAFLAEFPLCYGYWKKYADHEARVGAMDKVVEVYERAVQGVTYSVDIWLHYCTF
AINTYGDPDTIRRLFERALVYVGTDFLSSPLWDKYIEYEYMQQDWSRVAMIYTRILENPI
QNLDRYFSSFKELAETRPLSELRSAEESAAAAACVDASESAPSASGGKADEGQSQADGST
DQSPKLESAGSVDPEELKKYVGIREAIYTKAKEFESKIIGFEMAIRRPYFHVRPLNVAEL
ENWHNYLNFIEKDGDFNKVVKLYERCVVACANYPEYWIRYVLNMKENGSTDLADNALARA
TQVFVKKQPEIHLLAARLKEENGDIAGARAVYQLMHSEISPGLLEAVNEHAYMERRLGNL
DDAFTLYEQVIAVEKGKEHSPILPFLYAQYARFSYLVAGDAEKARRIVAEALDHLQPSKP
LLESLIHLESILLPPRKIDYLEPLVEKFIKPDADTQNTASSTEREELLLTYIEFLGLFGD
AKPTNKAKDLHAKLFLSQRSTSELRKRSADDFLSSDRTKMAKTYNGTPPAQPVSNAYPNS
QTQWSGGYAAQPQTWPPTQAAPAQPQQWNPAYGQQAAYGAYGGYPAGYTAPPAPTPVPQA
AAAYGAYPAQTYPTQSYAPPAAPVVAPVQQPAAAAAAPQAYYNTYY
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagcgaggccatggttgctgaaggatatacttctgcttcatatggagattat
aatgcttctgctacgactgtggaatccactgggaaagagactgcacctaatgttgatcca
tcacactcggtcaatgggactgcccatggagttggtcttactgctcctgctgagaatgga
gttgtaacagataacgtggctgtaacagctccagcatcggagcttggagacaatcctggc
tctgctctctcaccagaagaggagcgcttatggaatatcgtaaaggctaattccttagag
ttcaatgcttggactgccctgattgatgagacggagaggatagctcaggacaatatagca
aaaatccggaaggtgtatgatgctttcctagctgaattccctttgtgttatggctattgg
aaaaagtatgcggatcatgaggctcgagtgggggcaatggacaaggtcgtggaggtttat
gaaagagcagtgcagggagtgacatattctgtggacatctggttgcattattgcactttt
gccatcaacacatacggagatccagacacaatcagaaggctttttgaacgagctttggtt
tacgttgggactgatttcctttcctctccattgtgggacaaatacatcgagtacgagtac
atgcagcaggactggagccgagttgccatgatttacaccagaatattggagaatccaatt
caaaatcttgatagatatttcagcagctttaaggaactagctgagacacggcctctgtcg
gaactaaggagtgctgaggaatctgctgcagctgctgcttgtgttgatgcttctgagagt
gcaccatctgcgtctggtggaaaggcagatgaaggtcaatctcaggctgatggttccacc
gatcaatcccctaaactggaaagtgctggttcagttgatcctgaggagttgaagaaatac
gttggcatcagagaagccatatatacaaaagccaaagagtttgaatccaaaatcattggt
tttgaaatggctataaggaggccctatttccatgtgcggcctctcaatgtcgctgagctg
gagaattggcacaattatctgaatttcatagaaaaggatggagacttcaataaggtcgtc
aagctgtatgaaagatgtgtggttgcctgtgcaaattacccagaatactggatccgatat
gtattaaacatgaaagaaaatggaagtaccgaccttgccgacaatgcccttgctcgagca
actcaagtctttgtcaagaaacaaccagagattcaccttttggctgctcgactgaaagag
gagaatggggatatagctggtgcgagagctgtataccagttaatgcactctgaaatttct
cccggacttcttgaagcagtaaacgaacatgcttacatggaacgccgactaggtaatctg
gatgatgctttcactttgtatgagcaagtaattgctgttgaaaaggggaaagaacattcc
ccaatactgccatttctgtatgctcagtatgcacggttttcatacttggttgccggggat
gctgagaaagctaggaggattgtagccgaagcacttgaccatttacaaccgtcaaaacct
ctcttggaatcactgattcatttagaatcgatcctgctaccaccaagaaagattgattac
cttgagccgcttgtcgaaaaatttatcaagccagatgctgatacccagaacactgcgagt
tccactgagagggaagagctattgttaacatatatagagttcttgggtctttttggagat
gcgaagcccactaataaagcgaaagatctgcatgcaaaactttttttatctcaacggagc
acatcagagctgagaaagcgcagcgcagatgattttctctcgtcagataggacgaaaatg
gcgaaaacttacaatggcactccacctgcccagccagtatccaatgcatatccaaattct
cagactcaatggtctggtggttatgcggcgcagcctcagacttggccaccaacacaagca
gctcctgctcaaccgcaacaatggaaccctgcttacggtcaacaggctgcttatggtgca
tatgggggatatcccgccggctacacagctccaccagcaccaacacctgtgccacaggct
gctgctgcttatggtgcatatcctgctcagacatacccgacacagagctatgctcctcca
gcagcaccagtggttgcgccggtgcagcaacctgctgctgctgctgctgctccgcaagct
tactacaacacgtactactga
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