Camelina sativa (false flax): 104754588
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Entry
104754588 CDS
T05044
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
csat04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104754588
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104754588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104754588
04121 Ubiquitin system [BR:
csat04121
]
104754588
03400 DNA repair and recombination proteins [BR:
csat03400
]
104754588
Enzymes [BR:
csat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104754588
Spliceosome [BR:
csat03041
]
Complex B
Other components
Prp19 complex
104754588
Complex C
Prp19-CDC5 complex
104754588
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
U-box type E3
104754588
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
104754588
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
DSE1_N
ANAPC4_WD40
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_NOL10_N
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
CFAP251_N
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_EIPR1
WDR90_beta-prop_4th
ASA1
RMC1_N
Beta-prop_Aladin
Beta-prop_DCAF12
eIF2A
NBCH_WD40
Beta-prop_DCAF4
zf-Nse
Beta-prop_VPS8
U-box
PROPPIN
WD40_like
PAS_11
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
104754588
NCBI-ProteinID:
XP_010475111
UniProt:
A0ABM0WRG7
LinkDB
All DBs
Position
17
Genome browser
AA seq
522 aa
AA seq
DB search
MNCAISGEVPEEPVVSKKSGLLYEKRLIERHILDFGKCPVTGEPHTIEDIVPIKTGKIVK
PKALHASSIPGLLGAFQTEWDSLILSNFSLEQQLHTARQELSHALYQHDAACRVIARLKN
ERDESRQLLAEAERQLPAVPEVSTANAALSNGKRAMDDGEQGPDAKKMRLGISAEVITEL
TDCNAALSQQRKKRQIPKTLASIDALEKFTQLSSHPLHKTNKPGIFSMDILHSKDIIATG
GIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDADLVLTASSDKTVRIWGSSEDGNYS
CRHTLKDHSAEVRAVTVHATNKYFVSASLDSTWCFYDLSSGLCLAQVTDGSDEVDYTAAA
FHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHTGEITSVSFSENGYFLATAALDGVRL
WDLRKLKNFRTFDFPDANSVEFDHSGSYLGIAASDIRVFQTASVKAEWNPIKTLPDLSGT
GKATCVKFGPDSKYIAVASMDRNLRIFGLPGDDNTEDSAQDS
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaattgtgcaatttccggcgaagttccggaagagcctgtggtttcgaagaagtcgggt
ctgctctacgagaagcgactaatcgagaggcatatattggattttgggaaatgcccggtt
actggtgaaccacataccattgaggacattgttcccatcaaaactggcaagatcgtaaaa
ccgaaagcattacacgcatctagcatccctggattgcttggagcgttccagactgaatgg
gatagtttgatactatcaaatttttcgctggaacaacaattacatactgcaaggcaagag
ctaagtcatgctttgtatcagcatgatgctgcttgccgtgtgattgctaggcttaagaac
gaaagagacgaatcacgccaattgctcgctgaggctgaaaggcagttacctgcagtcccc
gaagtttccacagcgaatgctgctcttagtaatggcaaaagagctatggatgatggtgaa
caggggcctgatgcaaagaaaatgcgtcttggaatctcggctgaagttatcacagaactg
acagattgtaatgctgctctttctcagcaacgtaaaaagagacagatccctaaaacattg
gcttcaattgatgctctggagaagttcacccaactctcaagccacccacttcacaagacc
aacaaacctggcattttttcaatggacatcctacattctaaggatatcattgctactgga
ggaattgatacaactgccgttctctttgatcgtccttcaggacaaattttatcaacgttg
actggtcattcaaagaaggttacaagcattaagtttgttggtgacgctgatcttgtgttg
actgcttcatcagacaagacagtccgtatctggggaagttctgaggatgggaactattca
tgtagacatacattaaaagatcactctgcagaggtgcgagctgtaactgtccacgcaacg
aataaatactttgtgtcggcatctcttgacagtacatggtgcttctatgatctgtcctcc
ggtttatgccttgctcaggtgacagatggttccgatgaggtggattacacggctgctgct
tttcatcccgatggtctcattcttggaactggtaccgctcagtctattgttaagatttgg
gatgtaaaaagtcaggcaaatgtggcaaagtttggtggacacactggggaaatcacctct
gtatcattctctgagaacggttatttccttgcgactgctgcactagatggtgttaggttg
tgggacttgcgcaagttaaagaacttccgaacatttgactttccagatgcaaactcggtg
gagttcgaccacagtggatcttatcttggcattgctgcttcagatataagagtattccaa
acagctagtgtaaaagcagaatggaacccaatcaagacccttcccgacctgtccggtaca
ggtaaagcaacatgtgttaagtttggacccgactccaaatacatagcagtcgcttcaatg
gaccgtaatctcaggatatttggtttacctggcgatgacaataccgaagattctgcacaa
gattcatga
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