Camelina sativa (false flax): 104754824
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Entry
104754824 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH2-like isoform X3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104754824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104754824
03012 Translation factors [BR:
csat03012
]
104754824
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104754824
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104754824
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104754824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
R3H
HA2_C
Ank_2
HA2_N
Ank_5
AAA_19
nSTAND3
FXR_C1
AAA_22
ATPase
PhoH
AAA_7
Crinivirus_P26
Motif
Other DBs
NCBI-GeneID:
104754824
NCBI-ProteinID:
XP_010475407
LinkDB
All DBs
Position
17:2646466..2653885
Genome browser
AA seq
1600 aa
AA seq
DB search
MVKKDKTNTKHVTLCATTEAWATKLLEEFRASENDSYVFEQHLTNGERGIIHQMCRRMGL
ESKSHGSGEERRLTLFKSKAGSGDGISKSERKRKTRNQKGREGDGFSNSYSKHKYETRNQ
KGGAPRKKMIPPEKLKCVSFPPEAKTVLHDLFTRYPPCDGDTTGTSLGVYTGTARSNWRD
DFFLKPQLTTNDIKIKVASLSSRLETDKRFRQIFEARAKLPITSFRDAIISAVESNQVVL
IAGETGCGKTTQVPQYLLDHMWYNKQEACKIICTQPRRISAISVSDRISWERGETIGKTV
GYKVRLQSEGGRGSSVVFCTNGILLRVLIGKGVNSCVPDITHIIVDEIHERDAYSDFMLM
ILRDLLPSNPHLRLILMSATLDAERFSEYFGGCPVVRVPGFTYPVRTFFLEDALSVLISD
KNNHLLSADSNLPSNKHDFKDEEKVALDEAIDLAWTNDEFDCLLDLISSEGSHEVYNYQN
STTGLTPLMVFAGKGRVSDVCKLLSFGANCTLKSKEGITALEVAEKENQIETAQIIREHA
NNIQSNSQQAQDLLDKYMATMKPEEVDVGLIVKLMKKICSDSKDGAILVFLPGWEEIRKT
KEKLLENPHFADSGKFSILCLHSRVPAEEQKKVFDRPRRGCRKIVLATNIAESAVTIDDV
VYVIDSGRMKEKSYDPFNDVSTLQSSWVSKANAKQRAGRAGRCQPGVCYHLYSKLREASL
PEYRVPEVKRMPVDELCLQVKMLDPNCDVNDFLQKLMDPPVPQSIANALIILKDIGALTP
QEELTELGQKFGQLPVHPRISKMIYFAILVNCLDPALILACAADEKDPFIMPLLPGDRKK
ANAAKHELASLYGDHSDHLATVAAFQCWKNAKESGRASEFCSKYFISQIVMKRLDDLCRK
LQGELKRHGVIPSSSNCSLNAHDPGILRAVIAVGLYPMLGRMCPVCKNQTRSIVETITGA
KVRVPSLSNNVDMSSTKYDEALIVFDEITRGDWGVQIRSCTVLPTLPLLLFSREIAVSPT
ESYDADKSDDEEDHVVENVGDTMDIDKEGVRAGEKVMLAPENPVKVVVDRWLPFKVTAFE
IAQMYILRERLMASILFTVKHPKENLPPHLGASMYAIACILSYDSLARSSVQTVVVQPIA
SVPDATSAKDDIPSANPNELQEHDPNTTPMGSKLANKLVLGNMEESLPSNLADRNEKPDP
NTAPVEDVSAATQQKKIQSESKRRKSPNNVDLGNIEENLGSMEESTPSDLANGSEQKDPK
PVCKLDLGREKESIPSNLAHGNEQRDPNSPNNVDLGNIEENLGSMKVNTPSDLANGNEQK
DPKSVCKLDLGREKESIPSNLAHGNEQRDPNTSQTEDASAAKQPEKKRSRSKRRKSGNDM
DLGMMETSKPSDLANGNELTEPKPANNLDLGNMEENTPSDLAKENEQTELNLPKNFSYGN
MEESLPFNFANGDEQPDPSTTPMEAASSAKQPKNKRSRSKKHKSDNNLDLGNIEENKPSD
LANGNEQIEPKSVSRLDPGKEKESIPLNHVSGNNQPDPNTAPAAKKPKRKKRKLANHLDS
GNSMEEKVPSTDGQQEQCCEKTERKSGNKSEKVSVPSNPV
NT seq
4803 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagaaggacaagacgaatacgaaacatgttactctctgcgcaaccactgaggct
tgggccactaagctccttgaggagtttcgcgcctccgagaacgattcttacgtctttgag
cagcatcttacaaatggcgaacgtggcattatccatcagatgtgccgacggatgggtcta
gaatcaaaaagtcacgggagtggggaagaaaggcgtctaactctttttaaaagtaaagct
gggagtggagacggcatttcaaagtctgagagaaagcgtaaaacccgaaatcagaaagga
agagaaggagatggcttttcaaattcatacagcaagcataagtatgaaaccagaaatcag
aaaggaggtgctccaagaaagaagatgatacctccagagaagctcaaatgtgtgtcgttt
ccacctgaggcaaaaactgttctgcacgatttatttactcgctatccaccttgtgatggc
gatactactgggacatcattgggtgtatatactggaacggcccgcagtaattggagagat
gacttcttcctgaaacctcagttgacaacaaacgatattaaaataaaagtcgcatctctg
agttctagactggaaacagataaacgttttcgacagatctttgaagcacgagcaaagctt
cccatcacatcttttcgcgacgcgattatatctgcagtggaatccaatcaggttgttctt
attgctggtgaaactggctgtgggaaaactactcaggtgcctcaatatcttctagatcat
atgtggtataataagcaagaagcgtgcaaaatcatttgcacccagccacgtcgtatctca
gctatttcagtttctgatagaatatcttgggaaagaggtgaaactattgggaaaaccgtc
ggctacaaggttcggctgcaaagtgaaggtggaagagggtcatcagttgttttctgcaca
aatggcattctattaagggtgcttataggcaaaggcgtgaatagctgtgttcctgatata
actcacattattgtggatgaaattcatgaaagggacgcctactctgatttcatgttaatg
attttaagagacttgcttccatctaatcctcatctccgactgattctaatgagtgctact
cttgatgctgagaggttttctgaatatttcggaggttgcccggttgtccgagtgcctgga
ttcacttatccagtcagaaccttttttctggaagatgcgctttctgtcctgatatcagac
aagaataatcatctactttctgctgactcgaacttaccaagtaacaagcatgattttaaa
gatgaagaaaaagttgctttagatgaagcaatcgacttggcatggacaaatgatgagttt
gattgtctcttagatctaatttcttctgaaggaagtcatgaggtttacaattaccagaat
tcaacgactgggctaacaccacttatggtctttgctggaaagggcagggttagcgatgtc
tgcaagctcctttcatttggcgctaactgtacactgaagtccaaagaaggtataaccgca
ttagaagtggctgaaaaagagaatcaaattgaaactgctcagataatcagggaacatgca
aataacatccagtccaattctcagcaagcacaagacttacttgataagtatatggcgaca
atgaaaccagaagaagtagatgtgggtcttatagtgaagttaatgaagaaaatatgcagc
gattcaaaagatggtgccattcttgtttttctacctgggtgggaggaaatcaggaaaaca
aaagagaaattgcttgagaatccccattttgcagatagtggtaaattcagcattctatgt
cttcactcacgggttccggctgaggaacagaagaaagtttttgatcgcccccgtcgaggt
tgtcgcaaaattgtgcttgcgaccaatattgctgaatcagcagttactatcgatgatgtg
gtttatgtgatagatagcggccggatgaaggaaaagagttatgacccttttaatgatgtg
tcaacgctccaatcgtcttgggtatcaaaagcaaatgcaaaacagagggctggtcgagca
ggccgttgtcaaccaggcgtttgttatcatctatattctaaactccgggaagcgtctttg
cccgaatatagagttcctgaagttaagagaatgccagtggatgaactctgcttgcaggtt
aagatgctggatccgaattgcgacgtaaatgatttccttcagaaattaatggacccgcct
gttcctcaaagtattgcaaatgccttaatcatccttaaagatattggagcgttgactcct
caagaagagctgacagaacttggacagaaatttggtcagcttccagttcatcctcggatt
agcaagatgatttatttcgccatattagtgaactgtttggatccagcacttattctggca
tgtgcagccgacgagaaggatccgtttatcatgcccttgttgccaggtgatagaaaaaaa
gctaatgccgcaaaacatgaacttgcatcactttatggagaccatagtgatcatcttgcg
actgtcgcggcttttcagtgctggaaaaatgcaaaagaaagtggtcgagctagcgagttt
tgttcgaagtacttcatctcccaaattgtaatgaagaggctggatgatctgtgtcgcaag
cttcagggagaacttaaaagacatggggtcatccctagcagttcaaactgtagcctgaat
gctcatgatccgggtattctccgtgctgttatagcagtaggattgtaccctatgttggga
aggatgtgcccagtttgcaagaaccagacaagatctatagtagagactattactggagcc
aaagttcgtgtgccctcgctatcaaacaatgtcgacatgtcctctaccaagtatgacgaa
gctttaattgtttttgatgagattactcgaggagattggggtgtgcagataagaagctgc
actgttcttcccactttacctttgttacttttttcaagagagatagccgtgtctcctaca
gagagctatgatgctgataagagtgacgacgaggaagaccacgtagtagaaaatgtagga
gacacgatggacatagataaagaaggtgttagggctggagagaaagtaatgcttgcgccg
gaaaatccagtaaaggtagtagtggatcggtggctgcctttcaaggttacagcttttgag
attgctcaaatgtacatcttgagagagaggctaatggcgtccatattgttcacggttaaa
catccaaaggaaaatttgccgcctcatctcggtgcttctatgtatgcaatagcttgtatt
ctttcatatgatagcctcgctcgatcttcggttcaaactgtagttgtgcaacctattgct
tcagtgccagatgcaacgagtgccaaagatgacataccttctgctaaccccaatgagctt
caggagcatgacccgaacactactccaatggggtcaaagctagccaacaagttggttttg
ggtaatatggaagagagcttgccttcaaatctcgctgataggaatgagaaacctgaccca
aacactgctccggtggaagatgtttcagcggctacacaacaaaagaagattcagtcagag
tctaaaaggcgcaagtcgcctaacaatgtggatttggggaacattgaagagaacttgggg
agcatggaagagagcactccttctgatctggctaatgggagtgagcaaaaagaccctaag
ccagtctgcaagttggatctgggtagggagaaagagagcattccttctaatctcgcccat
ggaaacgagcaacgtgacccaaactcgcccaacaatgtggatttggggaacattgaagag
aacttggggagcatgaaagtgaacactccttctgatctggctaatgggaatgagcaaaaa
gaccctaagtcagtctgcaagttggatctgggtagggagaaagagagcattccttctaat
ctcgcccatggaaacgagcaacgtgacccaaacacttctcaaacggaagatgcttcagcg
gctaagcaaccagaaaagaagcgatcaaggtccaaaaggcgcaaatcaggcaacgatatg
gatttggggatgatggaaactagcaaaccttccgatctggcaaatgggaatgagctaaca
gagcctaagccagccaacaacttggatttagggaatatggaagagaacacgccttctgat
ctggctaaggagaatgagcaaacggagcttaatctacctaaaaactttagttatggtaac
atggaagagagcttgcctttcaattttgctaatggggatgaacaacctgacccaagcact
actccaatggaagctgcttcatcggctaaacaaccaaaaaataagcgatcgaggtccaaa
aagcacaaatccgacaacaacctggatttggggaacattgaagagaacaagccttctgat
ctggctaatgggaatgagcaaatagagcctaagtcagtcagccggttggatccgggcaag
gagaaagagagcattccactgaatcatgtcagtggtaataatcaacctgacccaaacact
gctccagcggccaagaaaccaaaaaggaaaaaacgcaaattagctaaccacttagattcg
ggtaacagtatggaagagaaagtaccttctactgatgggcaacaagaacaatgctgtgaa
aaaacagagcgaaagtcagggaacaagtcagaaaaagtgagcgtaccttccaatccagtg
tga
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integrated database retrieval system
