Camelina sativa (false flax): 104754943
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Entry
104754943 CDS
T05044
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104754943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104754943
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104754943
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104754943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
104754943
NCBI-ProteinID:
XP_010475541
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All DBs
Position
17:3089626..3094130
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AA seq
612 aa
AA seq
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MSSLLNSSINGSTSNLSDGSGRTFTSSFSGQSGAASPVFHHAGSIQGLHNIHGNFNVPNM
AGSLGSRNSGLNGVPSAGVQQQNGSISNGRFASSNIPVALSQISHGSSHGHSGLTNRGGL
GVSPILGNAGSRMTSSMGNMVGGGTMGRTLSSGGGLSMPSLGSRLNLAVNSGSGNIGQNR
MMGGGVIPQGSPQVLSMLGNSYPTAGGLSQNHVQAMNSLSSMGLLNEMNSNDTSPFDINN
DFPQLTSRPSSASGQGQLGSRLKQGLGISPIVQQNQEFSIQNEDFPALPGYKGSNADYPM
DMHHKEQLHENSMLMMQSQQLSMGRSGGFNLGGAYASHRPQQQHAQTVSSSGVSLHGSDI
FSSSHPSYHSQSGGPPGIGLRSMNSANSVTGMGYDQQLIQYQHQQNTSQYRLQQMSAVSQ
PFRDVGLKSTQATQSSPDRFGLLGLLSVIKMTDPDLTSLALGIDLTTLGLDLNSRENLHK
TFGSPWSNEPSKVDPEFSVPQCYYAKNPPPLHPGLFAKLLVETLFYVFYSMPKDEAQLYA
ANELYNRGWFYHKEHRLWFIRIGEPLVKTNAYERGSYHCFDPNSFDIVQKENIVLYYEML
EKRPSLSQDSQH
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtttacttaattcatcaattaacgggtctacctcgaacttgtcagacggttca
gggagaacgtttacttcttctttctctggtcagtctggggcagcgtctcccgtgtttcat
catgctggatctattcagggccttcacaacattcatggaaactttaatgttcccaatatg
gcgggttcccttggatcgagaaattcaggtttaaatggtgttccttctgctggtgtccaa
caacaaaatggaagtatttcgaatggaagatttgcatccagcaatattccggttgcactc
tctcagatatctcatggtagctctcatggacactcaggactcactaatagggggggattg
ggagtttctccaattttgggaaatgcaggttctcgaatgacgagttcaatgggaaatatg
gtcggtggaggcacaatgggtaggactttgagctctggtggaggattatcgatgcctagt
cttggttctcggctaaacttggcggttaatagcggttctggaaatattggacagaatcgc
atgatgggtggtggagtcattccacaaggatctccgcaggttctttcgatgctgggaaat
tcttaccctacagctggagggctttcccaaaatcatgtgcaagcaatgaacagtctaagc
tctatgggattgctgaatgaaatgaactccaacgacacttctccatttgatataaataat
gattttcctcagctcacaagccgccccagctctgccagcggtcaaggacaattggggtct
cgattgaaacaaggccttggaatcagccccatagttcagcaaaaccaagagttcagcatc
caaaatgaagattttccagcattgccaggatataaaggtagtaatgctgattatccaatg
gatatgcatcataaagaacaactccatgagaattcaatgttaatgatgcaatctcaacaa
ttatctatgggaaggtccggtgggtttaacttaggtggagcttacgcgtcacatcgtcct
caacaacaacatgctcaaactgtgagtagtagtggtgtctccttacatgggtctgacatc
ttctcatcgtcgcatccatcttatcactcgcagtctggtggaccaccgggtatcggatta
agatctatgaattctgcaaattctgtcactgggatgggttatgaccagcagcttatccaa
tatcagcaccaacagaacacgtcgcagtatcgtttgcagcaaatgtcagctgttagccaa
cctttcagagatgtggggttaaaatcaacgcaggctacacagtcaagtcctgatcggttt
ggcttgcttggtttgctcagtgtgataaagatgactgaccctgacttgacttctttggca
cttgggattgatctgacaacactggggttagatttgaactcaagagaaaatcttcataag
acttttggctcgccttggtccaatgaaccctctaaagttgatccagaattcagtgtaccg
cagtgctactacgcaaaaaatcctccaccactacatccagggctctttgcaaaattattg
gtagaaacattgttttacgtattctatagcatgccgaaagatgaggcacaattatatgcg
gcaaatgaactttacaataggggttggttctatcacaaagagcacaggttgtggttcatt
agaatcggggaacctctcgtgaaaacaaatgcgtatgaaagaggatcatatcactgtttt
gatccaaactcatttgatatagttcaaaaggaaaatattgttctctattacgagatgctg
gaaaaaagaccatccctatctcaagactctcaacattga
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