Camelina sativa (false flax): 104755452
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Entry
104755452 CDS
T05044
Name
(RefSeq) putative pectate lyase 2 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat00040
Pentose and glucuronate interconversions
csat01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
104755452
Enzymes [BR:
csat01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
104755452
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
104755452
NCBI-ProteinID:
XP_010476138
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Position
17:complement(5312018..5315019)
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AA seq
385 aa
AA seq
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MASLFLTVSLLFATFSSSLVEAVYYSNGYTTVPKLLLNPIDSCWRRNPSWAYNRRALADC
AVGFGKAAVGGKYGSIYVVTNPSDDPENPRPGTLRHAVIQSKPLWITFARDMVIVLRNEL
IMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPTHIGNRK
GSDGDAIAIFDSSHIWIDHCYFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDN
NXEDKIMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADPTIFSEGN
YFVASDDLSKKQVTKRIDSGYDWTRWKWRTSKDVFKNGAYFVPSGYGTVTPLYRRAEWFP
VSHGSLAPSLTSSSGPLRCYSGRIC
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcttttcttaacagtttcacttctctttgcaactttctcttcttctcttgta
gaagctgtttattacagtaatggttacactaccgttcccaaactattactaaatccgatc
gattcttgctggcgtagaaatcctagttgggcgtataaccgtcgtgccctcgcggattgc
gcggtagggtttggaaaagctgcggttggggggaaatacgggtcgatctacgtggttaca
aacccatcagacgaccccgaaaaccctagacctggaactcttagacacgccgtgatccaa
tctaaaccactatggatcacattcgcacgtgacatggtcatagtgttgcgaaacgaactc
atcatgaacagctacaagacgatcgacggaagaggtgcaaaagtagaaattgcatatggt
ccatgcataacgatccaacatgtgagccacgtcattatacatggaataagtatccatgat
tgtaaaccgggcaagtcaggtcgtgtgcggagcagccccactcatattggcaaccggaaa
ggatcagatggtgatgcaatcgctatttttgattcttcacatatttggattgatcattgt
tacttttctcggtgtcaagatggtttgatcgatgtgcttcatgcttctacggccgtcact
atttctaataactacttcacgcagcatgataaagtgatgttactcggacataatgacaat
aatntggaggataaaatcatgagagttacaattgcattcaaccattttggaccgggtctc
attgagaggatgccaagggtgaggagagggtatgcgcacgtagcaaacaataggtacgag
aaatggcaaatgtatgcgatcggaggaagtgctgatccaaccatttttagtgaaggcaac
tacttcgttgcttctgatgacttaagcaaaaaacaggtgacaaagagaatagatagtgga
tatgattggacgagatggaaatggagaacgtccaaagacgttttcaagaacggagcttac
ttcgtgccttctggctacggaaccgtcacaccattgtacagaagagcagagtggtttcct
gtgtcccacggatctctggccccttctcttacttcttcctccggtcctctccgttgctac
tccggcaggatttgctaa
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