Camelina sativa (false flax): 104755517
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Entry
104755517 CDS
T05044
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
csat
Camelina sativa (false flax)
Pathway
csat04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104755517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csat04131
]
104755517
Membrane trafficking [BR:
csat04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104755517
Hops complex
104755517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf_RING_Vps8
zf-RING_11
Nup54_57_C
zf-rbx1
zf-C3HC4
zf-RING_Vps41
zf-RING_5
zf-RING_UBOX
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
104755517
NCBI-ProteinID:
XP_010476221
LinkDB
All DBs
Position
17:5632638..5639471
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AA seq
988 aa
AA seq
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MDQGRQVFSVDLLERYATKNRGMITCMAAGNDVIVLGTSKGWIIRHDFGLGNSNDVDLSV
GRAGEQSIHKVFVDPGGSHCIATVTGVGGAETFYTHAKWPKPRVLSRLKGLVINAVAWNR
QQITEVSTKEIILGTQDGQLFEMAVDEKDKREKYIKFLFELEELPEAFMALQMETANISS
GMRYYVMAVTPTRLYSFTGIGTLESVFASYKERAVHFMELPGEIPNSELHFFIKQRRAVH
FAWLSGTGIYHGGLNFGAQHSYPNGDENFVENKALLDYSKLSDGTEAVKPGSMALSEYHF
LLLIGNKVKVVNRISEQIIEELQFDTTADSVSRGIIGLCSDASAGLFYAYDQNSIFQVSV
IDEGRDMWKVYLDLKVYAAALANCRDPLQRDQVYLVQAEAAFTDKEYLRAASFYAKINYV
ISFEEVTLKFISINEPEALRTFLLRKLDNLSKDDKCQITMISTWATELYLDKINRLLLED
DTAIENRDSEYHSVIQEFRAFMSDCKDVLDEATTMKLLESYGRVEELVYFANLKEQYEIV
VHHYIQQGEAKKALDVLQKSSVSDELQYKFAPELIMLDAYETVEAWMANKNLNPRRLITA
MMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGIHNLLLSLYAKQEDDSALLRFLQCKF
GKGRENGPEFFYDPKYALRLCLKEKRTRACVHIYSMMSMHEEAVALALQIDPELAMAEAD
KVEDDEDLRKKLWLMVAKHVVKQEKGAKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNKQIEQLKEEMNDATRGADNIRNDISALTQRYAVIDRDEECGVCK
RKILMMTGDFRMAQGYTSAGPLAPFYVFPCGHSFHAQCLITHVTSCAHEEQAEHILDLQK
QLTLLGSETRRDINGSRSDEPITNTTTADKLRSELDDAIASECPFCGELMINEITLPFIK
PEDSLNSASWDLRPPTNLANQRTISLPV
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaggaaggcaagtattttcagttgatctcctagagagatatgccacgaagaat
cggggcatgattacatgtatggctgctgggaacgacgtaattgttctgggaactagtaaa
ggatggattatacgccatgacttcggacttggcaattctaatgatgttgatctttctgtt
ggtcgagctggggagcaatcgattcataaggtttttgttgatcctggtggtagccattgc
attgctactgtcactggtgttggtggagctgaaaccttttatactcatgctaagtggcct
aagcctcgtgtcttgagccgcttgaaaggtttggttattaatgccgtcgcttggaataga
caacagattactgaagtttcaaccaaggagatcattctgggcactcaggatggtcagctg
tttgagatggccgtggatgagaaggacaagagagagaagtacatcaagtttttgtttgaa
cttgaagaacttcccgaggctttcatggctttgcagatggaaacggccaacattagcagt
gggatgaggtactatgtgatggctgtaactcccactcgactctactccttcaccgggatt
ggaacattagaatctgtttttgctagttataaagaacgtgctgttcattttatggaactt
cctggtgaaataccaaacagtgaactacatttctttataaagcaacgaagagcagtgcat
tttgcatggctttcaggaacaggaatttatcatggtggtctgaactttggagctcagcac
agttatccaaatggtgatgaaaactttgtggagaacaaagcactcttggattactcaaaa
ttgagtgatggcactgaagcagtcaagcctggttcgatggcactctctgagtatcatttc
ttgcttcttattggtaataaggttaaggttgtgaatcggataagtgaacaaatcattgaa
gagctccagtttgatacaacagcagattcagtttcgaggggtataattggactttgcagc
gatgcctctgctggcctcttctatgcatatgatcaaaattcgatattccaggtttctgtg
attgacgaaggccgagatatgtggaaggtttacctagacttgaaagtctatgctgcagct
ttagcaaactgtcgtgaccctctccagagagaccaagtttatttagttcaggcagaagct
gcattcaccgacaaggaatatctgcgagcagcatcattttacgccaaaatcaattacgta
atatcttttgaggaggtcacattgaagtttattagtataaacgaaccggaagctttgaga
acattcttgttgcggaagcttgataatctttcaaaggatgataaatgccaaataaccatg
atatcaacatgggcaactgagctatatttggacaagataaatcggttgcttttggaagat
gacactgctatagaaaatcgcgactcggagtaccactcagtcattcaagagttccgtgct
ttcatgagcgactgcaaggatgtattggatgaggcaaccactatgaaacttctggaaagt
tatggtcgggttgaggagttggtatattttgcaaacttgaaggagcaatatgaaattgta
gtccaccattatattcagcaaggggaagcaaagaaagcattagacgtgctacagaaatct
tcagtttcagatgagcttcagtacaaatttgcgccggagcttattatgcttgacgcgtat
gaaaccgtggaagcatggatggccaacaaaaaccttaatccaaggagattaattactgca
atgatgcgctactcaagcgaacctcatgcaaagaacgagacacatgaagtcataaaatat
cttgagttttgcgtccaccgtttgcataacgaggacccagggattcacaatttacttctc
tcattatatgccaagcaggaagatgacagtgccctgcttcgtttcctgcaatgcaaattt
gggaaaggacgagaaaacggtcccgagtttttctacgatcccaaatatgctttgcgcctg
tgtctcaaagaaaagagaacccgtgcctgtgtccatatctacagcatgatgtctatgcat
gaagaggcagtagcccttgctcttcagattgatccagaacttgctatggctgaggctgat
aaggttgaagatgatgaagacttgagaaagaagctgtggctgatggttgcaaagcatgtt
gtcaagcaggaaaagggagctaaaagggaaaacataaggaaagctattgcttttctcaag
gaaactgatggtcttctaaagatagaagatattttgcctttctttccggactttgcctta
attgatgacttcaaggaagcgatttgctcatctcttgaggattacaacaagcaaatagaa
caactgaaagaggagatgaatgatgccacacgtggtgcggataacattagaaatgatatt
agtgcgctaactcaaagatatgctgtaatcgaccgtgacgaggaatgcggggtttgtaaa
cgtaaaatcttgatgatgaccggagatttcagaatggcccagggatatacttcagctgga
ccattagctcctttttatgtctttccttgtgggcactctttccatgcacagtgcctgatc
acacacgtcacaagctgtgcacacgaagagcaagccgagcatatacttgatctgcagaag
cagctgacattgcttggtagcgaaacccggagggatataaatggtagccgatctgatgaa
cccataacaaatacaactactgcagacaagcttcggtcagagctagatgatgctattgcc
agcgaatgcccgttctgtggagaattaatgatcaacgagatcactttgccttttatcaaa
cctgaagattcactaaattctgcatcttgggacctccgaccaccgaccaacttagcaaac
cagaggaccatttctttgcctgtttga
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