Camelina sativa (false flax): 104755905
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Entry
104755905 CDS
T05044
Name
(RefSeq) probable CCR4-associated factor 1 homolog 2
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104755905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104755905
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104755905
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104755905
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
104755905
NCBI-ProteinID:
XP_010476692
UniProt:
A0ABM0WVB2
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All DBs
Position
17:7367474..7369075
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AA seq
289 aa
AA seq
DB search
MSQAPNPKEEDDDNNTIEIREVWSHNLEAEMALIEKSIDDFPYVAMDTEFPGIVCKTVTT
NPNPNPKHYEYNYGTLKTNVNMLKLIQLGLTLSDERGNLPTCGTNNKQCIWQFNFREFNL
KSDMFAMDSINLLRGSNIDFEKNNECGVDSKRFAELLMGSGVVLNDKIQWVTFHCGYDFG
YLLKLLSGKDLPEEKSEFFDQVTSYFPVVYDIKYLMGFCAPLYGGLERVADILGVKRVGI
SHQAGSDSLLTLRAFNKMKEMFFTGSLDRYSGFLYGLDNPQLLLAGSKK
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaggctccgaatccaaaagaagaagacgatgataataatacaatcgaaatccgc
gaggtctggtcccataacctcgaagcagagatggctctgattgaaaaatcaatcgacgac
ttcccttacgtcgccatggacactgagttcccaggtatcgtttgcaaaaccgtgacgacg
aatccaaacccgaaccctaaacactacgagtacaactacgggaccttgaagacgaacgtg
aacatgctcaagctgattcagctcggtctcacgttatcagacgagcgagggaacttacca
acctgtggaaccaacaacaaacaatgcatctggcaattcaatttcagagagttcaatctc
aaatccgacatgttcgcaatggactcaatcaacctcttacgcggctcaaacatcgatttc
gagaagaacaacgagtgcggcgtcgattcgaaacgattcgctgagcttctaatgggttcg
ggtgtagtgcttaacgataagatacagtgggtgacgtttcactgcggatacgattttgga
tatttgcttaaactcttgtcagggaaagatttgcctgaggagaaatcggagttcttcgat
caggttacgagctatttccctgtagtgtacgatatcaaatacttgatggggttctgcgca
ccgttatacggagggttggagagagtagcggatatacttggtgtgaaacgggttgggatt
tctcatcaggctggttcggatagcttgttaacgttgcgtgctttcaacaagatgaaagag
atgttcttcactggttccttggatagatattctggttttttgtatggattagataatcct
cagctcctcctcgccggatccaaaaaataa
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