Camelina sativa (false flax): 104756109
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Entry
104756109 CDS
T05044
Name
(RefSeq) cleavage stimulation factor subunit 77-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104756109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104756109
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
104756109
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_CcmH_CycH
Iml2-TPR_39
TPR_2
TPR_8
TPR_16
TPR_Slam
Motif
Other DBs
NCBI-GeneID:
104756109
NCBI-ProteinID:
XP_010476938
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Position
17:complement(8204099..8210798)
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AA seq
737 aa
AA seq
DB search
MADNNKYNVEEAEALAKRALHLPIAQATPIYEQLLSLYPTSARYWKQYVEAQMAVNNDDA
TKQIFSRCLLNCLQVPLWQCYIRFIRKVYDKKGAEGQDETTKAFEFMLNYIGTDIASGPI
WTEYITFLKSLPALNSYEDSQRLRKVYQRAILTPTHHVEQLWKDYENFENSVNRQLAKGL
INECQPKFNSARAVYRERKKYIEEIDWNMLAVPPTGSSKEEIQWVAWKKFLSFEKGNPQR
IDTASSTKRIIYVYEQCLMCLYHYPDVWYDYADWHVKSGSADAAIKVFQRALKAIPDSEL
LKYAYAEMEESRGAIQSAKKLYESILGASTNSLAHIQFLRFLRRAEGVEAARKYFLDARK
SPSCTYHVYIAFATMVFCLDKDPKVAHKIFEEGLKLYMSEPVYILEYADFLTRLNDDRNI
RALFERALSTLPAEESAEVWKRFIQFEQTYGDLASILKVEQRRKEALSGKGEEGSTPLES
SLQDVISRYSYMDLWPCSSKELDHSARQELLVKNLDKKVGKTNLPHGPAAIGTVASSSKV
VYPDTSQMVVYDPTKKSDLASSANPMAASASNTFPNIVTSTTTATATHGSANTFDEIPKT
TPPALLAFLANLPIVDGPTPNVDVVLSICLQSDLPTGQNVKQSFAAKGNASSQNDPSGPT
RSGSQRLSRDRRATKRKDSDRQEEGDTATVQSQPLPTDVFRLRQMRKARGISTSSQTPTG
STSYGSGFSGELSGSTG
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggctgataataataagtacaatgttgaggaagcagaggctttggccaagagagccttg
catttaccaattgcacaggcgacgccgatctatgagcagcttttgtctctttatcccact
tctgcgagatattggaagcagtatgtggaggcacagatggctgtaaacaatgatgatgct
acgaagcagatatttagtcgttgtctgttgaattgccttcaagttcctctttggcaatgt
tacattcggttcatcagaaaggtttatgacaagaagggagcagagggtcaagatgagacc
acaaaggcgttcgagttcatgcttaactatattgggacagacatagcatctggacctata
tggaccgagtacattacctttttaaaatctcttccggctcttaactcctacgaagattcg
caacgactccgaaaagtgtatcagagagctatattaactcctacccaccacgttgaacaa
ctttggaaagattatgagaacttcgaaaattcggttaaccgtcaattggcaaaaggactt
ataaatgagtgtcagccaaaatttaacagcgcaagagctgtatatagggagcgcaagaag
tacattgaagaaattgattggaacatgcttgctgtcccaccaacaggatcttccaaggaa
gaaattcagtgggtggcctggaaaaagtttttatcctttgaaaaaggaaaccctcaaagg
attgacacggcctcgtcaacgaagcggattatatatgtctatgaacagtgtctgatgtgt
ttatatcactatcccgatgtatggtatgactatgcggactggcacgtaaaatctggttct
gcagatgccgcaatcaaagtatttcagcgagcccttaaagccattcctgattcagaactg
ttgaaatatgcttatgccgagatggaggaatcacgtggagcaattcagtcagcgaagaaa
ttatatgaaagcattttgggagctagcacaaactctttggcacatatacaatttcttcgc
tttctccggagggccgagggtgttgaagctgctcgcaagtactttttagatgctagaaaa
tctcctagctgcacatatcatgtgtacattgcttttgctacgatggtcttttgtcttgac
aaggatccaaaggttgctcataagatctttgaggagggattgaaactctatatgagtgaa
cctgtttacatccttgagtatgcagatttcttgactagattgaatgatgatagaaatatc
agagctctatttgagcgggcattaagcacattaccagctgaagaatctgctgaggtctgg
aaaagattcatacagttcgagcaaacatatggagatcttgctagcattctaaaggttgag
cagagaaggaaagaagcactttctggaaaaggggaagagggatctactcctctagagagt
tcacttcaagatgttatttctcggtacagttacatggatctttggccatgcagttctaag
gagcttgatcattcagccagacaagagttgcttgtgaagaatctggataagaaagtgggg
aagacaaatctacctcatggtcctgcagctataggtactgtagcttcttcgtcgaaagtt
gtttatccagatacatctcagatggttgtttatgacccgacaaagaaatcagatttggct
agttctgcaaacccaatggcagcttctgcttcgaacaccttcccaaatattgtgacttcg
actacaactgcaactgcaactcatggatcagccaacacatttgacgaaataccaaagact
actccacctgcattgttagcgtttttagctaacttgcctattgttgacggtccaacaccc
aatgtggatgttgttctgtcgatatgtttgcagagtgacttaccaacaggtcaaaatgta
aagcagagtttcgctgctaaaggcaatgcttcaagtcaaaacgatccctcgggtccaacc
cgcagtgggtctcaaagattatcaagagacagaagagctacaaagagaaaagattcagac
aggcaagaagaaggggatacagcaactgtacaaagccagcctctgcccacagatgttttc
agacttaggcagatgcgtaaagctcgtgggatctcaacatcatcgcagacaccaactggt
tccacgtcgtatggtagtggcttctctggcgagctttccggtagcactggttaa
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